CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.113e-36
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 152.91 bits (385), Expect = 2.113e-36
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.113e-36
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.760e-36
Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 545
            K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL ++   +K +IWDTAGQERY ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R V  EE++ +AQEN L F ETSA  + NV+  F E+
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.760e-36
Identity = 78/204 (38.24%), Postives = 120/204 (58.82%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV---------------QPAPNPSGMVLMDRPGERTASASCCS 644
            K+VL+GD G GKS+++ RF +  F    +STIG  F +++L +   T+K +IWDTAGQERY ++   YYRGA  A++VYDIT + SF+   +W++EL+   + ++V+ + GNK+DL+  R V+ +E +A A++ GLFF+ETSA  A NV + F  I   +  +                P P+    + +D     T  A CCS
Sbjct:   14 KMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRA-CCS 216          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.760e-36
Identity = 74/168 (44.05%), Postives = 109/168 (64.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 581
            K+VL+GD   GKS L+ RF + +F    ++TIG  F ++TL ++  TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + SF+   +W++EL+   + N+V+ L GNK+DL   R V  E+A+ +A+   LFFMETSA  +TNV + F  +   + R+    N
Sbjct:   20 KVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.760e-36
Identity = 83/193 (43.01%), Postives = 116/193 (60.10%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA---KRLPRVQPAPNPSGMVLMDRPGERTASAS-CCS 644
            KL+L+GD G GKS L+LRF    ++E   STIG  F  +T+  +  T+K +IWDTAGQER+ ++   YYRGA   IIVYD+T++ SF   K+W+ E+    + N+   L GNK+DL + R +  E A+A+A E G+ FMETSAK ATNV   F  ++   K     QPA N +    +   G+  A  + CCS
Sbjct:   10 KLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCS 202          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.605e-36
Identity = 82/193 (42.49%), Postives = 111/193 (57.51%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA----KRLPRVQPAPNPSGMVLMDRPGERTASASCCS 644
            KL+L+GD G GKS L+LRF    +++   STIG  F  +T+  +  T+K +IWDTAGQER+ ++   YYRGA   IIVYD+T+Q SF   K+W+ E+    + N+   L GNK+DL   + V  E A+A+A E G+ FMETSAK ATNV   F  +A     R+     A N     +  R        SCCS
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCS 202          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.708e-36
Identity = 72/162 (44.44%), Postives = 105/162 (64.81%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 563
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R V  EE +A+A+E+GL FMETSAKTA NV + F   AK + R
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.030e-36
Identity = 83/195 (42.56%), Postives = 116/195 (59.49%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA---KRLPRVQPAPNPSGMVLMDRPGE----RTASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+ E+    + N+   L GNK+DL   + V    A+A+A E G+ F+ETSAK ATNV   F  +A   K     QP P  +G  ++ RP E     + S+SCC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVV-RPQEGKPINSKSSSCC 203          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_MOUSE2.113e-3645.63Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.113e-3645.63Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.113e-3645.63Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPT31_YEAST2.760e-3646.79GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RGP2_ORYSJ2.760e-3638.24Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RGP1_ORYSJ2.760e-3644.05Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RBD2A_ARATH2.760e-3643.01Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTM2_MAIZE3.605e-3642.49GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB2B_HUMAN4.708e-3644.44Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPTC1_CHLRE8.030e-3642.56GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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