CF838393

Overview
NameCF838393
Unique NameCF838393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1173 contig Csv1_Contig1173:102..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.167e-56
Identity = 109/196 (55.61%), Postives = 128/196 (65.31%), Query Frame = 3
Query:  213 DLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            DLF ++LK+RND  C   GFYTYDAFIAAA SF  F        R++EIAAF  QTSHETTGG  +A   P+  GYCF ++                    +Y+GRGPIQ++   NY  AG AI  +L+ NPD VA D TISFKTA WFWMTPQ  KPS HDVI G+W PSA+D  A R+PGYGV+TNIINGGIEC
Sbjct:   34 DLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQ---------------SDRYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIEC 212          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.306e-56
Identity = 107/196 (54.59%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  216 LFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXR-KREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            +F  +L +R+++ C  +GFYTYDAFIAAA SF AF          +RE+AAF  QTSHETTGG   + D  + WGYCFK+E                A    Y+GRGPIQ++   NY  AG A+ +DL+GNPD V+ D  +SFKTA WFWMT Q  KPSCHDVI G+W PSA+DT AGR+PGYGV+TNIINGGIEC
Sbjct:   40 VFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSD-QFQWGYCFKEEINK-------------ATSPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIEC 221          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.076e-55
Identity = 109/196 (55.61%), Postives = 125/196 (63.78%), Query Frame = 3
Query:  213 DLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            DLF ++LK+RND  C   GFYTYDAFIAAA SF  F        R++EIAAF  QTSHETTGG  +A   P+  GYCF ++                    +Y+GRGPIQ++   NY  AG AI  DL+ NPD VA D TISFKTA WFWMTPQ  KPS HDVI G W PSA+D  A R PG GV+TNIINGGIEC
Sbjct:   34 DLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQ---------------SDRYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIEC 212          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.396e-55
Identity = 109/199 (54.77%), Postives = 129/199 (64.82%), Query Frame = 3
Query:  210 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINV--DLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            R+LFEQ+L  RN+ AC  KGFYTYDAFIAAA SF  F        RK+EIAAF  QTSHET GG      G +  GYCF ++                    +Y+GRGPIQ+++  NY  AG+ I V  DL+ NPD VA DP ISF+TA WFWMT Q  KPSCH+VI GQW PS +DT A R+PGYGV+TNIINGG+EC
Sbjct:   33 RELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQ---------------SDRYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLEC 212          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.460e-54
Identity = 108/199 (54.27%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  210 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINV--DLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            R+LFEQ+L  RN+ AC  KGFYTYDAFIAAA SF  F        RK+EIAAF  QTSHET GG      G +  GYCF ++                    +Y+GRGPIQ+++  NY  AG+ I V  +L+ NPD VA DP ISFKTA WFWMT Q  KPSCH+VI GQW PS  DT A R+PGYGV+TNIING  EC
Sbjct:   33 RELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQ---------------IEQSDRYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFEC 212          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.655e-46
Identity = 104/263 (39.54%), Postives = 136/263 (51.71%), Query Frame = 3
Query:    3 AEHRVSQA-GGAVCPGGLCCSKFGFCGNTPAYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYC-FKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIIN 785
            ++HR   A G   C    CCS  G+CG    YC+                                      LF+Q+  HR D  C  +GFY+Y +F+ AA+SF AF        RKRE+AAFLA  S + T G  +  + P+AWG C          D+C  S  WPCA GKKY  RGPIQ+++N+NYG AG+AI  DL+ NPD V  DP ISFKTA WFWM+    KPSCHD++        +++ A R+P  GV+ NII+
Sbjct:   68 SDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVT--EPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHIS-QATSGERSDVENPHAWGLCHINTTTVTENDFCT-SSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN------ANSAANRIPNKGVIGNIIS 318          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.774e-41
Identity = 96/256 (37.50%), Postives = 120/256 (46.88%), Query Frame = 3
Query:   39 CPGGLCCSKFGFCGNTPAYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQE-QGNPGDYCQPS-QQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            C  G CCS++G+CG T AYC                                      + F   +K++    C GK FYT  +F+ AA+S+  F         KREIAAF A  +HET                C+  E  G   DYC  S +QWPC PGKKY+GRGP+QIS+N+NYGPAGK I  D L +PD VA DPTISFKTA WFWM       + H V++                G+G     ING +EC
Sbjct:   32 CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMS---------------QGFGATIRAINGALEC 253          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.929e-38
Identity = 94/257 (36.58%), Postives = 117/257 (45.53%), Query Frame = 3
Query:   39 CPGGLCCSKFGFCGNTPAYC-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQE-QGNPGDYCQPS-QQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            C   +CCSK+G+CG    YC                                       + F   +K++    C GK FYT  +F+ AA S+  F         KREIAAF A  +HET                C+  E  G   DYC  + +QWPC PGKKY+GRGP+QIS+NYNYGPAG+ I  D L +PD VA DPTISFKTA WFWM       + H V+               L G+G     ING +EC
Sbjct:   34 CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVM---------------LQGFGATIRAINGALEC 256          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.943e-37
Identity = 88/255 (34.51%), Postives = 115/255 (45.10%), Query Frame = 3
Query:   39 CPGGLCCSKFGFCGNTPAYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQ-QWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            C   +CCSKFG+CG T  YC                                        F   +K++  + C+GK FYT  AF++A K +  F         KREIAAF A  +HET               +C+  E      YC P++ QWPCA G+KY+GRGP+QIS+NYNYGPAG+AI  D LG+P  VA D  ++FK A WFWM       S H V+                 G+G  T  +   +EC
Sbjct:   25 CQPNVCCSKFGYCGTTDEYC--------GDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVP---------------QGFGATTRAMQRALEC 237          
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.843e-37
Identity = 89/255 (34.90%), Postives = 116/255 (45.49%), Query Frame = 3
Query:   39 CPGGLCCSKFGFCGNTPAYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPS-QQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            C    CCSKFG+CG T AYC                                      D F   +K++  + C+GK FYT  AF++A  ++  F         KREIAAF A  +HET               +C+  E      YC  S +QWPCA G+KY+GRGP+QIS+NYNYGPAG+ I  + L +P+ VA D  I+FKTA WFWM       + H V+                 G+G     ING +EC
Sbjct:   30 CQPNFCCSKFGYCGTTDAYC--GDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMN------NVHGVMP---------------QGFGATIRAINGALEC 248          
The following BLAST results are available for this feature:
BLAST of CF838393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CHIQ_TOBAC2.167e-5655.61Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ6.306e-5654.59Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC1.076e-5555.61Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SOLCI2.396e-5554.77Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC3.460e-5454.27Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
AGI_URTDI2.655e-4639.54Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_ORYSJ9.774e-4137.50Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ5.929e-3836.58Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.943e-3734.51Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE3.843e-3734.90Endochitinase A OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838393 ID=CF838393; Name=CF838393; organism=Citrus sinensis; type=EST; length=800bp
CGGCTGAACACCGTGTCAGCCAGGCTGGAGGAGCTGTATGTCCAGGAGGA
CTGTGTTGCAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCAC
TGGTGGCTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCAGGCCGACTA
AACCGACTCCCGTACCTGCTCCTAGCGGCGGCGGGAACAATATCGGTTCA
CTAATTAGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGC
AGCTTGCCAAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCG
CCAAATCCTTTGGTGCCTTCGGAACAACCGGTGACACCGATACTCGCAAA
AGAGAAATCGCTGCCTTTTTGGCTCAAACTTCACATGAAACTACAGGTGG
CTGGCCTACTGCGCCCGATGGTCCATATGCATGGGGATATTGCTTCAAGC
AGGAACAAGGAAACCCTGGAGATTATTGTCAACCAAGTCAACAATGGCCA
TGTGCACCTGGGAAAAAGTATTTTGGTCGAGGTCCCATCCAGATTTCATA
CAACTACAACTACGGTCCAGCAGGAAAAGCCATAAACGTTGACTTGCTTG
GCAACCCAGATGCTGTGGCAAATGATCCTACTATTTCGTTCAAGACTGCT
TTCTGGTTCTGGATGACCCCACAGTCACCAAAACCTTCATGCCACGATGT
TATCACAGGCCAATGGAAGCCATCAGCCTCCGACACTCAAGCTGGTCGCC
TTCCCGGTTATGGGGTTGTCACCAACATCATCAATGGTGGCATTGAATGT
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