CF838393

Overview
NameCF838393
Unique NameCF838393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1173 contig Csv1_Contig1173:102..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838393 vs. ExPASy Swiss-Prot
Match: CHIA_ARAHY (Endochitinase 1A (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.921e-12
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:  663 MTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIEC 800
            MT Q  KPS HDVITG+W PSA+D  AGR+ G+GV+TNIINGG++C
Sbjct:    1 MTAQGNKPSSHDVITGRWTPSAADRAAGRVSGFGVITNIINGGLDC 46
The following BLAST results are available for this feature:
BLAST of CF838393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CHIA_ARAHY1.921e-1267.39Endochitinase 1A (Fragment) OS=Arachis hypogaea PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838393 ID=CF838393; Name=CF838393; organism=Citrus sinensis; type=EST; length=800bp
CGGCTGAACACCGTGTCAGCCAGGCTGGAGGAGCTGTATGTCCAGGAGGA
CTGTGTTGCAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCAC
TGGTGGCTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCAGGCCGACTA
AACCGACTCCCGTACCTGCTCCTAGCGGCGGCGGGAACAATATCGGTTCA
CTAATTAGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGC
AGCTTGCCAAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCG
CCAAATCCTTTGGTGCCTTCGGAACAACCGGTGACACCGATACTCGCAAA
AGAGAAATCGCTGCCTTTTTGGCTCAAACTTCACATGAAACTACAGGTGG
CTGGCCTACTGCGCCCGATGGTCCATATGCATGGGGATATTGCTTCAAGC
AGGAACAAGGAAACCCTGGAGATTATTGTCAACCAAGTCAACAATGGCCA
TGTGCACCTGGGAAAAAGTATTTTGGTCGAGGTCCCATCCAGATTTCATA
CAACTACAACTACGGTCCAGCAGGAAAAGCCATAAACGTTGACTTGCTTG
GCAACCCAGATGCTGTGGCAAATGATCCTACTATTTCGTTCAAGACTGCT
TTCTGGTTCTGGATGACCCCACAGTCACCAAAACCTTCATGCCACGATGT
TATCACAGGCCAATGGAAGCCATCAGCCTCCGACACTCAAGCTGGTCGCC
TTCCCGGTTATGGGGTTGTCACCAACATCATCAATGGTGGCATTGAATGT
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