CF838395

Overview
NameCF838395
Unique NameCF838395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 76/187 (40.64%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  105 DESSSQAQLTP----DFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPG-IVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRT-ANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHT 647
            D ++ Q  L P    DFY  +CP A +I+   +Q+A   D+ + A L+RLHFHDCFV GCD S+LLD  A          ++    +A  F+ ++ +   L   C G +VSC+D+LA+A+  SV +SGGPS+ VPLGRRD  + A +      LP P   +  L    + + L D TDLVALSG HT
Sbjct:   29 DGNARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTA--FKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINL-DATDLVALSGGHT 212          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 81/210 (38.57%), Postives = 109/210 (51.90%), Query Frame = 3
Query:  111 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILL-DNVANDTSIDSEKFSMANNNSARG--FEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLNA 731
            S+    LT D+Y  TCP+ + I+   +           A  +RL FHDCF+ GCD S+L+  N  N    D +      N S  G  F++V  +K ALE +CPG+VSCADILA A+   V + GGP + V LGR+DG  +       NLP   Q++  +   F   G     +LVALSG HT G + C+ FS R+F        DP LNA
Sbjct:   20 SAPPPNLTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLIATNSFNKAERDDDL-----NESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFT-LKELVALSGGHTIGFSHCKEFSNRIF-----PKVDPELNA 218          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.550e-29
Identity = 79/210 (37.62%), Postives = 110/210 (52.38%), Query Frame = 3
Query:  111 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILL-DNVANDTSIDSEKFSMANNNSARG--FEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLNA 731
            S+  A L  D+Y  TCP+   I+   +           A  +RL FHDCF+ GCD S+L+  N  N    D +      N+S  G  F++V  +K ALE +CPG+VSCADILA A+   V + GGP + V LGR+DG  +       N+P   QT+  + G F   G +   ++VALSGAHT G + C+ FS RL+        +P   A
Sbjct:   27 SADVAILRTDYYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLIATNSFNKAERDDDL-----NDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPYFDVKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFS-LREMVALSGAHTIGFSHCKEFSDRLYGSRADKEINPRFAA 230          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.266e-28
Identity = 77/201 (38.31%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  129 LTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVAND--TSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDG-RTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTG-NPDP 719
            L+  +Y  TCP    I+   L + F  D    A+L+RL FHDC V GCD SILL+ + +   T +DS K     N   R  ++V ++K +LE  CP  VSC+D++ +A+  +V L+GGP  +VPLGR+D   T ++ +AD  LP     +D     F N G+    + VA+ GAHT G   C     R  N N T  N DP
Sbjct:   38 LSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAK-----NFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIE-ESVAIMGAHTIGVTHCNNVLSRFDNANATSENMDP 232          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  186 VLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGI-VSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQC 665
            V+  A N++ R+ ASLIRL FHDCFV+GCD  +LL++ A  T    E+ +  NNNS RGF V++  K  +++  P + VSCADIL+IA+  S     G ++TV LGR+D RTAN + A+  L  P + L     +F   G N  T++VAL G+HT G A+C
Sbjct:   78 VVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFT---GEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFN-GTEMVALLGSHTIGFARC 234          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 67/198 (33.84%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  120 QAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNP 713
            QA L+ D+Y  TCP     ++ ++ +   +        +RL FHDC V+GCD SIL+ +    TS      + +    A  F+V+  +K A+E  CP IVSC+DIL  A+   +++ GGP   V  GR+D   ++ +  +  L  P  T+D +   F + GL    ++VAL GAHT G + C+ F+ R+FN +    P
Sbjct:   19 QANLSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDA--FDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQ-EMVALVGAHTIGFSHCKEFASRIFNKSDQNGP 213          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.678e-26
Identity = 65/206 (31.55%), Postives = 105/206 (50.97%), Query Frame = 3
Query:  111 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLN 728
            + ++  L  +FY  TCP A +I+   ++  +        S +R  FHDC V  CD S+LLD+   +        S       R F  ++ +K ALE  CPG+VSC+DIL +++ + +   GGP   +  GRRDG  +   + +  LP   +++ ++  +F ++G+ D   LVAL G+H+ GR  C     RL+        DP+LN
Sbjct:   25 TEAEPGLMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEHDRSFG----LRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPSLN 220          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  126 QLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPS-WTVPLGRRDGRTANRSLADQNLPTPFQTLDLLQGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLN 728
            +L  ++Y  +CP A  II   ++  +        S +R  FHDC V  CD S+LL+      S    K S       R F+ V  +K ALE  CP  VSCADI+A+++   + +  GP    +  GRRD R +     +  +P    +L  +   F ++G+ D    VAL GAH+ GR  C     RL+        DPTL+
Sbjct:   29 ELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQKSKRSF----GMRNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSVGRVHCVNLVHRLY-----PTIDPTLD 220          
BLAST of CF838395 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  357 RGFEVVDAMKAALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLP 551
            RGF V+D++K  +E+ C   VSCADIL +A+  SV   GGPSWTVPLGRRD   AN + A+ +LP
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLP 67          
The following BLAST results are available for this feature:
BLAST of CF838395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER1_SORBI6.711e-3040.64Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER41_ARATH1.495e-2938.57Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER65_ARATH2.550e-2937.62Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PER29_ARATH1.266e-2838.31Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PERA_IPOBA2.159e-2844.72Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER6_ARATH3.117e-2733.84Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER42_ARATH7.678e-2631.55Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH2.826e-2032.18Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PERX_WHEAT1.502e-1355.38Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838395 ID=CF838395; Name=CF838395; organism=Citrus sinensis; type=EST; length=735bp
TGCAAGAGTACCCCTTAAAGACCACTCACTAATTTCTCTTCAGAAGGAAA
ATGCCCCTTCTTCGTTATCTTCTTGCAGCAGCTGTCCTTTTCGCGTTTGT
GCTTGACGAATCATCATCTCAAGCTCAGCTTACGCCAGATTTTTACAACA
CCACATGCCCTAATGCATCAAACATCATTCTGGGTGTTCTTCAGAATGCT
TTCAATTCCGATATCCGAATCACTGCCAGCCTCATCAGGCTTCATTTTCA
TGACTGCTTTGTCAACGGCTGTGATGGGTCAATCTTGCTGGACAACGTTG
CCAATGATACGAGCATAGACAGCGAGAAATTTTCGATGGCAAATAATAAT
TCAGCAAGAGGTTTCGAAGTTGTTGATGCCATGAAAGCAGCCCTTGAGAG
TGCCTGTCCTGGCATTGTTTCCTGTGCTGATATTCTTGCCATTGCTTCTG
AACAATCCGTCAATTTGTCAGGTGGTCCTTCATGGACAGTTCCACTGGGA
AGAAGAGACGGCAGGACAGCGAACAGGAGCCTTGCAGATCAGAATCTTCC
AACACCATTTCAGACTCTTGATTTGCTCCAAGGCAGATTTACAAATGTCG
GTCTCAACGACAATACTGATCTGGTTGCACTCTCCGGCGCTCACACTTTT
GGAAGGGCACAGTGTCAATTTTTCAGCCAAAGATTATTCAATTTCAATGG
AACTGGCAATCCAGACCCAACGCTGAACGCAACTC
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