CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838400_ssr470 microsatellite CF838400_ssr470:470..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1276 contig Csv1_Contig1276:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            ++K+VF  FDK+GDG I+  EL E +R L    +  E   M+ + D +G+G I+ DEF  L++  +GG    +                                G IS +EL  V+  LG  E   +++CKKMI KVD+DGDG VNFDEF++MM  GG
Sbjct:   17 DIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGN--------------GRISAKELHSVMKNLG--EKCSVQDCKKMISKVDIDGDGCVNFDEFKKMMSNGG 159          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+GDG I+F EF  M+   M   D +E+                               DG IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGDGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ DVDGDG VN+DEF +MM
Sbjct:   12 EFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMADTDTEEE-------------------IREAFKVFDKDGNGFISAAELRHVMTNLG--EKLSDEEVDEMIREADVDGDGQVNYDEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V+++LG    N  E   +MIR+ D+DGDG VN+DEF +MM
Sbjct:   14 EFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGNIDFPEFLTMMARKMQDTDTEEE-------------------IREAFKVFDKDGNGYISAAELRHVMTSLGEKLTN--EEVDEMIREADLDGDGQVNYDEFVKMM 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+GDG I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+GDG I+F EF  M+   M   D +E+                               DG IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGDGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRYVMTNLG--EKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 57/158 (36.08%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+ + M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CML24_ARATH5.453e-1936.48Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CALM_RENRE7.369e-1637.18Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CALM_PHYPO7.369e-1637.18Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
CALM_DICDI7.369e-1636.54Calmodulin OS=Dictyostelium discoideum GN=calA PE=... [more]
CALM_PYUSP1.642e-1536.54Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_PATSP1.642e-1537.18Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_OREMO1.642e-1536.08Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_ELEEL1.642e-1536.08Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_XENLA2.144e-1536.08Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA2.144e-1536.08Calmodulin OS=Torpedo californica PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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