CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_METSE (Calmodulin OS=Metridium senile PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ DVDGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQVNYEEFVNMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFC-MLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  ++ + M   D +E+                               +G IS  EL  V++ LG  E    E  ++MIR+ DVDGDG +N++EF ++M A
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEE-------------------LKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVEEMIREADVDGDGQINYEEFVKIMMA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 54/156 (34.62%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ D+DGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------ILEAFKVFDKDGNGFISAAELRHIMTNLG--EKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 54/156 (34.62%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ D+DGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------ILEAFKVFDKDGNGFISAAELRHIMTNLG--EKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALM_DANRE2.144e-1536.08Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID2.144e-1536.08Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK2.144e-1536.08Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]
CALM_BOVIN2.144e-1536.08Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]
CALM_ANAPL2.144e-1536.08Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2[more]
CALM_METSE2.800e-1535.90Calmodulin OS=Metridium senile PE=1 SV=3[more]
CALM_CIOIN3.657e-1536.54Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM1_ARATH3.657e-1534.81Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CALM_PYTSP4.777e-1534.62Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PHYIN4.777e-1534.62Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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