CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFC-MLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  ++ + M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ DVDGDG +N++EF ++M A
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEE-------------------LKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM2_BRALA (Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +M+R+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMVREADIDGDGQVNYEEFVEMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E+K  F  FD DGDG IT  EL   +++L    +D E EEM+ +VD +G+G IE+ EF  +    MG    EK                               +GLI+  EL  V++    +E    E   +MIR+ D+DGDGMVN++EF +MM
Sbjct:   11 EIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEK------------------EMREAFRVFDKDGNGLITAAELRQVMANFS-DEKLTSEEISEMIREADIDGDGMVNYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = -3
Query:  252 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLY------EGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKAGG 728
            EL++VF  +D +GDG I+  EL   LR L   +   E   M+ ++D++ DG ++  EF   +       G  GGD +++                                G IS  EL  VL  LG  +   + +C +MIR VD DGDG VNFDEF++MM  GG
Sbjct:    5 ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSN------------GKISARELHRVLRQLG--DKCSVADCSRMIRSVDADGDGCVNFDEFKKMMGGGG 155          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 56/158 (35.44%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +V+A+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF +MM A
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVNADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVAMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALM2_ORYSI6.239e-1534.81Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALM2_BRALA6.239e-1535.26Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 ... [more]
CALM1_BRALA6.239e-1535.90Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL6.239e-1535.90Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CABO_LOLPE6.239e-1534.84Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CML18_ORYSJ8.148e-1532.73Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CALM_STIJA8.148e-1535.90Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_MYXGL8.148e-1535.44Calmodulin OS=Myxine glutinosa PE=2 SV=3[more]
CALM_HALOK8.148e-1535.90Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALMB_HALRO8.148e-1535.90Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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