CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF  MM
Sbjct:    1 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEFVAMM 135
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E  +M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ D+DGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------ILEAFKVFDKDGNGFISAAELRHIMTNLG--EKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++MV +VDA+G+G I+F EF  M+   M   D +E+                               +G+IS  EL  V++ LG  E    E   +MIR+ DVDGDG++++ EF +MM
Sbjct:   14 EFKEAFSLFDKDGDGSITTKELGIVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLAMMARKMKDVDSEEE-------------------IREAFKVFDKDGNGIISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGVIDYSEFVKMM 148
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E        +MIR+ DVDGDG +N+DEF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEE-------------------IKEAFKVFDKDGNGYISAAELRHVMTNLG--EKLTDTEVDEMIREADVDGDGQINYDEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  ++   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEE-------------------IKEAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E        +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEE-------------------IKEAFKVFDKDGNGYISAAELRHVMTNLG--EKLTDNEVDEMIREADVDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  ++   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEE-------------------IKEAFRVFDKDGNGFISAAELRHIMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  ++   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEE-------------------IKEAFRVFDKDGNGFISAAELRHIMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E        +MIR+ D+DGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEE-------------------IKEAFKVFDKDGNGYISAAELRHVMTNLG--EKLTDNEVDEMIREADIDGDGQINYEEFVKMM 146
[Close]
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALMF_NAEGR (Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = -3 
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT +EL   +R+L    T+ E  +M+ +VDA+G+G I+F EF  M+ + M   D +E+                               +G IS +EL  V+  LG  E    E   +MIR+ D+DGD  +N+ EF +MM
Sbjct:   18 EFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTEAELHDMINEVDADGNGTIDFTEFLTMMAKKMKDTDNEEE-------------------IKEAFKVFDKDGNGFISAQELRHVMCNLG--EKLTDEEVDEMIREADIDGDNQINYTEFVKMM 152
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALMB_ARBPU8.148e-1535.90Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALM_SACJA1.064e-1434.62Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM_PNECA1.064e-1435.90Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALM_PAXIN1.064e-1435.90Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_TRYCR1.390e-1434.62Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]
CALM_PLEOS1.390e-1435.26Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=... [more]
CALM_TRYBG1.815e-1433.97Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB1.815e-1433.97Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_PLECO1.815e-1434.62Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALMF_NAEGR1.815e-1434.62Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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