CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 54/155 (34.84%), Postives = 74/155 (47.74%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G G I+F EF  L    M     E+                               +G IS  EL  V++ LG  E    E   +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEE------------------EIKEAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E   M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    +  ++MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEE-------------------IKEAFKVFDKDGNGYISAAELRHVMTNLG--EKLSEDEVEEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 55/156 (35.26%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    +  E E+M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E        +MIR+ DVDGDG +N++EF +MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPSQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEE-------------------IKEAFKVFDKDGNGYISAAELRHVMTNLG--EKLTDSEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKI--ENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDG+G IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++    N G K+  E   +MIR+ D+DGDG VN++EF +MM
Sbjct:   12 EFKEAFSLFDKDGNGNITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDKDGNGFISAAELRHVMT----NPGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 54/152 (35.53%), Postives = 76/152 (50.00%), Query Frame = -3
Query:  276 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF
Sbjct:    1 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDSNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEF 131          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 54/152 (35.53%), Postives = 76/152 (50.00%), Query Frame = -3
Query:  276 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF
Sbjct:    5 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEF 135          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALMA_ARBPU (Calmodulin-alpha (Fragment) OS=Arbacia punctulata PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 54/152 (35.53%), Postives = 76/152 (50.00%), Query Frame = -3
Query:  276 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEF 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D+DGDG VN++EF
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E +  F+ FD+D DG IT  EL   +R+L    T  E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G I+VEEL  VL++LG  E    E    MIR+ D DGDG++N++EF R++ +
Sbjct:   13 EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEE-------------------VREAFKVFDKDGNGYITVEELTHVLTSLG--ERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++M+ +VD +G+G I+F EF  M+   M   D +E+                               +G IS  EL  V++ LG  E    E   +MIR+ D DGDG VN++EF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEE-------------------IREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADTDGDGQVNYEEFVGMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALL3_HUMAN (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFC-MLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E  +M++++D +G+G ++F EF  M+   M   D +E+                               +G +S  EL  V++ LG  E    E   +MIR  D DGDG VN++EF R++
Sbjct:   12 EFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEE-------------------IREAFRVFDKDGNGFVSAAELRHVMTRLG--EKLSDEEVDEMIRAADTDGDGQVNYEEFVRVL 146          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALM_EUGGR2.371e-1434.84Calmodulin OS=Euglena gracilis PE=1 SV=2[more]
CALM_BLAEM2.371e-1435.26Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CALM_AGABI3.096e-1435.26Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CALM2_BRAFL3.096e-1434.81Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]
CALN_CHICK4.044e-1435.53Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV... [more]
CALM_ORYLA4.044e-1435.53Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]
CALMA_ARBPU4.044e-1435.53Calmodulin-alpha (Fragment) OS=Arbacia punctulata ... [more]
CALM_SCHPO5.281e-1433.54Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CALM_SUBDO6.897e-1435.26Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALL3_HUMAN1.537e-1332.69Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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