CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838400_ssr470 microsatellite CF838400_ssr470:470..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1276 contig Csv1_Contig1276:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K   + FDKDGDG IT  EL   +R++    T+ E ++M+ +VDA+G+G I+F EF  M+   M   D +E+                               +G IS  EL  +++ LG  E    E   +MIR+ D+DGDG +N++EF +MM
Sbjct:   12 EFKEAGSLFDKDGDGTITTKELGTVMRSVGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE-------------------ILEAFQGFDKDGNGFISAAELRHMMTNLG--EKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALMS_CHICK (Calmodulin, striated muscle OS=Gallus gallus GN=CCM1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FD+DGDG IT  EL   +R+L    T+ E ++MV +VDA+G G I+F EF  L    M     E+                               +G IS  EL  V++ LG  E    E   +MI++ D + DG VN++EF RMM
Sbjct:   12 EFKEAFSLFDRDGDGCITTMELGTVMRSLGQNPTEAELQDMVGEVDADGSGTIDFPEFLSLMARKMRDSDSEE------------------EIREAFRVFDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIKEADCNNDGQVNYEEFVRMM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E +  F  FDKDG+G I+  EL  ++R+L    T+ E  EM+ +VD +G+G IEF EFC++ + MM     E                                +G+I+ +E    +  +G+      E   +MI++VDVDGDG ++++EF +MM
Sbjct:   25 EFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMMKRMMKETDSE-------------------MIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSE--EEVDEMIKEVDVDGDGEIDYEEFVKMM 158          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = -3
Query:  261 KKGELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 737
            K+ E+K  F  FD DG G I   EL  ++R L   +T+ +  +M+A VD +G G I+FDEFC +    + G+R  K                               +G IS E++  +   LG  E   +++ + MI + D D DG VN +EF RMMK
Sbjct:   23 KRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFCHMMTAKI-GERDTK-----------------EELMKAFRIIDQDNNGKISPEDIQRIAKELG--ENFTVKDIQDMIEEADRDRDGEVNVEEFLRMMK 161          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 51/156 (32.69%), Postives = 75/156 (48.08%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E ++MV ++D +G+G ++F EF  M+   M   D +E+                               +G +S  EL  V++ LG  E    E   +MI+  D DGDG VN++EF  M+
Sbjct:   12 EFKEAFSLFDKDGDGCITTQELGTVMRSLGQNPTEAELQDMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEE-------------------IREAFRVFDKDGNGFVSAAELRHVMTRLG--EKLSDEEVDEMIQAADTDGDGQVNYEEFVHML 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML19_ORYSJ (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEE---MVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E +RVF+ FD+D DG I+  EL   ++    +  DM AEE   +V+  D + DGL++ +EF  L   +  GD +E+                               +G I+   L  +LS LG ++G  IE C+ MI + D+DGDG+++F+EF+ MM A
Sbjct:    7 EFRRVFSAFDRDADGKISAAELRLCMK--AALGEDMSAEEAEALVSSADTDDDGLLDEEEFTKLAVQLEMGDEEER----------------CRGLMEAFRMYEMEGEGRITPASLKRMLSKLGSHQG--IEECQTMICRFDLDGDGVISFEEFKIMMDA 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 51/159 (32.08%), Postives = 74/159 (46.54%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDM----EAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E++RVF  FD DGDG I+ +EL    R +    ++     E   M+ ++D + DG ++  EF   + G   GD + +                                G I+  ELG VL  +G  EG   E C++MI  VDVDGDG V F+EF++MM
Sbjct:   27 EIERVFTRFDADGDGRISPSELAAVTRAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAA-FHGRGRGDAEHEAELRAAFDVYDVDGD-----------------GRITAAELGKVLGRIG--EGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALL3_MOUSE (Calmodulin-like protein 3 OS=Mus musculus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    T+ E + MV ++D +G+G ++F EF  M+   M   D +E+                               +G +S  EL  V++ LG  E    E   +MI+  D DGDG VN++EF  M+
Sbjct:   12 EFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQGMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEE-------------------IREAFRVFDKDGNGFVSAAELRHVMTKLG--EKLSDEEVDEMIQAADTDGDGQVNYEEFVHML 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 53/163 (32.52%), Postives = 72/163 (44.17%), Query Frame = -3
Query:  261 LKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYE--------GMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 725
            L+R+F  FDK+GDGFIT  EL ++L  L L     + +  V      G+  + FD+F  L++        G  GG   E                                 G IS  EL  VL  LGL EG ++E  +KMI  VD + DG V+F EF+ MM+
Sbjct:   30 LQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNFDDFSSLHKTLDDSFFGGACGGGENEDDPSSAAENESDLAEAFKVFDENGD--------GFISARELQTVLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMMR 184          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML23_ORYSJ (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica GN=CML23 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLR-NLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGM-MGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E +RVF +FD+DGDG I+ TEL   ++ +L   + D E + ++A  D +GDGL++ +EF  L   M   GD +E                                 G I+   L L+LS LG +    +  C+ MI + D++GDG++ FDEF+ MM A
Sbjct:    6 EFRRVFGSFDQDGDGKISATELRLCVKASLGEDMPDEEVQALMALADTDGDGLLDEEEFVRLVTEMEADGDEEE-----------DDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTH--LDVAECQAMICRFDMNGDGVLTFDEFKTMMMA 151          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALM_ACHKL2.007e-1333.33Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CALMS_CHICK3.423e-1334.19Calmodulin, striated muscle OS=Gallus gallus GN=CC... [more]
CALL_CAEEL3.423e-1330.97Calmodulin-like protein OS=Caenorhabditis elegans ... [more]
CATR_ATRNU4.471e-1332.08Caltractin OS=Atriplex nummularia PE=2 SV=1[more]
CALL3_RAT4.471e-1332.69Calmodulin-like protein 3 OS=Rattus norvegicus GN=... [more]
CML19_ORYSJ9.960e-1332.50Putative calcium-binding protein CML19 OS=Oryza sa... [more]
CML16_ORYSJ1.301e-1232.08Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CALL3_MOUSE1.301e-1232.69Calmodulin-like protein 3 OS=Mus musculus GN=Calml... [more]
CML42_ARATH3.785e-1232.52Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CML23_ORYSJ6.456e-1232.70Putative calcium-binding protein CML23 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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