CF838400

Overview
NameCF838400
Unique NameCF838400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_NEUCR (Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_MAGGR (Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_COLTR (Calmodulin OS=Colletotrichum trifolii PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_COLGL (Calmodulin OS=Colletotrichum gloeosporioides PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = -3
Query:  258 ELKRVFATFDKDGDGFITKTELVESLRN-LRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMKA 728
            E   +FATFD DGDG I+  EL   ++  L   V+D EA ++VA VDA+GDGL+   EF  L +     +  E+                               +G I+   L  +L  LG ++   I++C+ MI + D++GDG+++FDEF+ MM A
Sbjct:   11 ESSALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDER---------------RGTGLREAFGMYEMEGEGCITPTSLRRMLRRLGSDQ--DIDDCRAMICRFDLNGDGVLSFDEFKIMMNA 151          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_EMENI (Calmodulin OS=Emericella nidulans GN=camA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EYKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_ASPOR (Calmodulin OS=Aspergillus oryzae GN=cmdA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EYKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CALM_AJECG (Calmodulin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=CAM1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEF-CMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            E K  F+ FDKDGDG IT  EL   +R+L    ++ E ++M+ +VDA+ +G I+F EF  M+   M   D +E+                               +G IS  EL  V++++G  E    +   +MIR+ D DGDG ++++EF ++M
Sbjct:   12 EYKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEE-------------------IREAFKVFDRDNNGFISAAELRHVMTSIG--EKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 46/160 (28.75%), Postives = 75/160 (46.88%), Query Frame = -3
Query:  264 ELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFC-----MLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMM 728
            + +  F+ FDK+ DG I++ EL   L  L +  +  + ++M+  VD +G+G IEFDEF       LYE   G D +E                                +G IS  EL +V+++LG  E    +    M++  D + DG V+++EF+R+M
Sbjct:   12 DFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKLYENDKGDDEEE--------------------LRKAFRIFDKDDNGFISRNELSMVMASLG--EEMTEDEIDDMMKAADSNNDGQVDYEEFKRVM 149          
BLAST of CF838400 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 49/159 (30.82%), Postives = 73/159 (45.91%), Query Frame = -3
Query:  261 KKGELKRVFATFDKDGDGFITKTELVESLRNLRLMVTDMEAEEMVAKVDANGDGLIEFDEFCMLYEGMMGGDRQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLISVEELGLVLSALGLNEGNKIENCKKMIRKVDVDGDGMVNFDEFRRMMK 737
            KK E+K  F  FD DG G I   EL  ++R L   +T+ +  +M+A VD +G G I+FDEF  +    + G+R  K                               +G IS +++  +   LG N  +     ++M+ + D D DG VN DEF RMM+
Sbjct:   24 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAKI-GERDTK-----------------EELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTD--AEIREMVEEADRDRDGEVNMDEFMRMMR 162          
The following BLAST results are available for this feature:
BLAST of CF838400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CALM_NEUCR8.432e-1231.41Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2[more]
CALM_MAGGR8.432e-1231.41Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4[more]
CALM_COLTR8.432e-1231.41Calmodulin OS=Colletotrichum trifolii PE=3 SV=2[more]
CALM_COLGL8.432e-1231.41Calmodulin OS=Colletotrichum gloeosporioides PE=2 ... [more]
CML31_ORYSJ1.101e-1132.91Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CALM_EMENI1.101e-1131.41Calmodulin OS=Emericella nidulans GN=camA PE=3 SV=... [more]
CALM_ASPOR1.101e-1131.41Calmodulin OS=Aspergillus oryzae GN=cmdA PE=3 SV=2[more]
CALM_AJECG1.101e-1131.41Calmodulin OS=Ajellomyces capsulata (strain ATCC 2... [more]
CML6_ORYSJ4.185e-1128.75Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CML20_ARATH4.185e-1130.82Probable calcium-binding protein CML20 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838400 ID=CF838400; Name=CF838400; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTGTAGCCATTAATTCCAGACAANCTTTATTCCAATACGAGAGGA
ATTCTTTCAAAATCAGATTTAAGGCATAATCTACAACTTAAGTTTGTGTG
TGCCATGCCATTACACGAAGCATCCGTACATTTGGTTAGTGGCGTCAAAG
GCTTCTGAAACAAGCTCTTCTAATTATTGTTGTATGTACAATCTCTGTTC
TGTACGCAGTGAACTTGGAATCACAGAGACTCAAAAGGCTGTAAGAAGCA
CTCCTCCAGCCTTCATCATCCTCCTAAACTCATCAAAATTAACCATCCCG
TCACCGTCCACGTCAACTTTCCTAATCATCTTTTTACAATTTTCAATCTT
GTTACCTTCATTTAACCCTAAGGCAGACAACACTAGCCCCAACTCCTCCA
CTGAAATCAACCCATCTTTATCTTTATCAAACACATCAAAAGCATCCTTC
AAATCATCGCCTTCATCGGCACCACCACCACCACCACCTTCCCCATCTCC
GGCGCCGCCCTTTTCCTGGCGATCTCCACCCATCATGCCCTCGTACAACA
TGCAAAACTCATCAAACTCAATCAGCCCATCTCCATTAGCATCAACTTTT
GCAACCATTTCTTCGGCTTCCATGTCGGTAACCATCAGCCTTAGGTTCCG
TAGCGACTCTACAAGCTCCGTCTTTGTTATGAATCCGTCCCCGTCTTTGT
CAAAAGTCGCAAATACCCTCTTGAGCTCACCTTTCTTGTATGCAC
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