CF838409

Overview
NameCF838409
Unique NameCF838409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: LRCH1_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 52/170 (30.59%), Postives = 75/170 (44.12%), Query Frame = 3
Query:  276 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 785
            LN+S  KL E P      H L                       V+ D S N+L E+P  L   ++L      +NCI  +PE + +   ++ L++  N+L+ L   L      L  LIAS N L  +PE IG L +L+ LD+  N I ++P  I    SL E  +  N L
Sbjct:   76 LNLSARKLKEFPRTAAPGHDLSDT--------------------VQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCG--LPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYL 223          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 3
Query:  276 LNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCS 752
            LN+S   L  E+  AIG+L  L+S+D+  N +  +IPDEIG+  +LV  D S N L  ++P S+ +   L      NN +T  +P  L     + +LD+ GN LT   + L+    +L  L    N+L G +   +  L+ L   D+  N +  +IP SI  C S
Sbjct:   76 LNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTS 240          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 66/210 (31.43%), Postives = 103/210 (49.05%), Query Frame = 3
Query:  180 WWEAVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALS 788
            +W  V LQ L L  N +   L  D+  L  L   +V  N L+  +P +IG     + LD+S+N I  +IP  IG    +       N+L   +P  +G    L+    S+N  +  +P  L + S   KL + GN LT    + + + + L+ L  + N L G +P  +G L +L  L+L  NR++  IPS+IS C +L +F +  N LS
Sbjct:  188 YWNEV-LQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFLQ-VATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLS 395          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: CHAO_TRICA (Chaoptin (Fragment) OS=Tribolium castaneum GN=CHP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 60/186 (32.26%), Postives = 93/186 (50.00%), Query Frame = 3
Query:  192 VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF-DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP---EDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI 725
            + L +L L HN +    +DL  N+P L VL++SHN L EL          L+ LD S N I +IP+++      ++  D S N+L+ LP +L R   L     S+N +  LP     LA    +S+LD+  N ++ LS+   +A +  L+ L  S N L  +   T   + RL  L+L  N  L++
Sbjct:  248 LSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGKLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIPRLASLNLGHNSQLTL 433          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  198 LQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNAL 785
            L+ L L++N+      D+  +L  LT L +  N LS L PA++G L  L  L +S+N++   IP+ +G+ + L     ++N+L   LP+SL    NL +   SNN +   L    ++C K+  LD+  N         I + + L  L+  K NL   +P ++G L ++  +DL  NR+  +IP  +  C SL    + +N L
Sbjct:  126 LEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQL 328          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 63/236 (26.69%), Postives = 110/236 (46.61%), Query Frame = 3
Query:  174 DKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS-------------------------LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNAL 785
            +++W    L+ L+LA N +     K    N   L  L +S  +LS E+PA I     LK LD+S N++  +IPD +     L     ++N L+  L SS+    NL +F   +N +                           +P ++ +C+++ ++D  GN+L+    + I     LT L   +N L+  +P ++G+  ++  +DL  N++  SIPSS     +L  F + NN+L
Sbjct:  306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: MPL1_DICDI (MAP kinase phosphatase with leucine-rich repeats protein 1 OS=Dictyostelium discoideum GN=mpl1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = 3
Query:  126 DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-----------------------SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSI 737
            ++P ++Y   + +          +L+ LIL  N I ++ E +  LP L  L+++ N+LS++P  + +L  L+SL++  N                       +I  +PD+  +   L       NQLKE+P SL   +   +    N+ I S  + L   S  ++ L++  NK+ VL  +L     + T LI   N++  +P   +GS   L+ L+L  N I  +P+ I
Sbjct:  137 EIPIQIYVGTEPSETYPSLSYNTELRSLILDFNKITEIPEQIGLLPNLKHLSLAANQLSQVPEFLSQLKSLESLELGINQFTSFPLNICKIKSLTLLRLETNNIKSLPDDFINLENLKDLSLLDNQLKEIPDSLPNNIEKLNL-GCNDIINSYSKSLIRISHSLTTLNLSENKIEVLDESLSCLVNVKT-LILDCNMIKVIPGSVLGSWKSLVTLNLPHNFISDLPAEI 363          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: CCR4_ENTBH (Probable glucose-repressible alcohol dehydrogenase transcriptional effector homolog OS=Enterocytozoon bieneusi (strain H348) GN=CCR4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  192 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 557
            V L++LIL +N+IE + ED+ NL  L VL+ S+NK+ ++P  +G L  LK L ++ N I+++P E+G+   L  F   +N L      + +  +L  F   NN     P D      + K+D
Sbjct:   42 VSLKQLILNNNDIETIPEDISNLIRLEVLDFSYNKIEKIPTELGRLINLKELYLNNNMIVEVPMELGTLYKLENFSILNNPLVHPYGIMSKDKSLLRFCRENNTNYKQPNDRVWIDTVLKID 163          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 54/211 (25.59%), Postives = 95/211 (45.02%), Query Frame = 3
Query:  246 DLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS-------------------------LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS 788
            ++  L  L   N+ +NKLS  LP  IG+L+ L+ L    N++   +P  +G+   L  F    N     +P+ +G+CLNL     + N I+                          +P+D+ + + +  L + GN L     + I +   L +L   +N LNG +P+ +G LS+++ +D  +N +   IP  +S    L   Y+  N L+
Sbjct:  152 EINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLT 362          
BLAST of CF838409 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 60/204 (29.41%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  198 LQKLILAHNN-IEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS 788
            L++LIL +N  I  +   L  +P L +L+++ NKLS E+P  I    +L+ L +  N+++  I  ++   T L  FD  +N L   +P ++G C        S N +T  +P D+    +++ L ++GN+L+    ++I     L  L  S NLL+G +P  +G+L+   +L LH N++  SIP  +     L    + +N L+
Sbjct:  142 LEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFL-QVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLT 344          
The following BLAST results are available for this feature:
BLAST of CF838409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
LRCH1_HUMAN3.526e-1130.59Leucine-rich repeat and calponin homology domain-c... [more]
ERL1_ARATH3.526e-1133.33LRR receptor-like serine/threonine-protein kinase ... [more]
CHAO_TRICA3.526e-1132.26Chaoptin (Fragment) OS=Tribolium castaneum GN=CHP ... [more]
PEPR2_ARATH4.606e-1130.54Leucine-rich repeat receptor-like protein kinase P... [more]
GSO2_ARATH4.606e-1126.69LRR receptor-like serine/threonine-protein kinase ... [more]
MPL1_DICDI6.015e-1125.76MAP kinase phosphatase with leucine-rich repeats p... [more]
CCR4_ENTBH6.015e-1133.61Probable glucose-repressible alcohol dehydrogenase... [more]
Y2317_ARATH7.856e-1125.59Probable leucine-rich repeat receptor-like protein... [more]
ERECT_ARATH7.856e-1129.41LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838409 ID=CF838409; Name=CF838409; organism=Citrus sinensis; type=EST; length=789bp
TAAGCGAAGAAAATACATGTCGTCCGAGATAAAAACGAACACAAACATAA
ACACAGAGCATGGATCGGATACTGAAAGCTGCAAGAACCTCCGGTTCTCT
CAACCTATCAAATCGCTCTCTCAGGGATGTGCCCAATGAGGTATACAAAA
ATTTCGATGAGGCGGGAGAGGGCGACAAGTGGTGGGAGGCTGTGGATTTA
CAAAAGCTAATTTTGGCTCATAATAATATTGAAAAGTTGAAAGAGGATTT
GAGGAATTTGCCTTTACTGACAGTACTGAATGTTAGCCACAACAAACTCT
CTGAACTTCCAGCTGCAATTGGAGAGCTTCACATGCTGAAATCGTTAGAT
GTATCCTTTAATTCAATTATGAAAATACCAGACGAGATTGGATCAGCAAC
TGCCCTTGTCAAGTTTGATTGTTCAAGTAATCAGCTTAAAGAACTCCCAA
GCTCACTTGGAAGATGTTTAAATTTATCAGATTTCAAGGCATCAAACAAT
TGTATAACAAGCTTGCCAGAAGATCTTGCAGACTGTTCGAAAATGTCCAA
ACTGGATGTGGAGGGGAACAAGCTAACAGTTTTATCCAACAACTTGATAG
CATCATGGACCATGCTTACAGAACTCATTGCATCAAAAAATTTGCTGAAT
GGCATGCCGGAGACCATTGGAAGTCTTTCACGTCTCATTCGTCTTGACCT
TCATCAGAACAGAATTCTGTCAATCCCATCTTCAATATCGGGATGCTGTT
CCCTTGCAGAATTCTATATGGGGAATAATGCACTGTCTG
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