CF838416

Overview
NameCF838416
Unique NameCF838416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.460e-18
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G  G+A AFG  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.460e-18
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G  G+A AFG  +  + +    ISGGH NPAVT+GL+   +      + Y++ Q +G I  A ++   + +G+ G  A  +   ++GY +    G  ++   V V  V SA        A D   P   AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.132e-18
Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G+ G++ AFG  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  E++ T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G A+
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL 194          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.132e-18
Identity = 54/169 (31.95%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGD--------GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G+ G+A AFG  +  + +    ISG H+NPAVT+GL+   +        Y++ Q +G +   G++   +  GQ G    G+   A+GY +           L +EI+ T + +  +  ATD KR+ +       AP+ IG  + L+HL +IP+T T +NPARS   A+
Sbjct:   33 IGLLGVALAFGLTVLTMAFAIGHISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILY-VIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATD-KRAPQG-----FAPIAIGLCLTLIHLISIPVTNTSVNPARSTAVAM 194          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 64/204 (31.37%), Postives = 105/204 (51.47%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 821
            RA +AEF +TF+F++    + + +VK   ++  S   +  +A A    +F  V  +  +SGGH+NPAV+ G  +  ++S+ RA++Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV 209          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV-GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            RA +AE + TFLF++  V + M   K      T+ G+  +A A   ++ V+V     +SGGHINPAVTLGL     ++L R+  Y   Q LG+     ++    G    G  A   +  A G      +  E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARS G A+
Sbjct:   19 RAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTG----GEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPAL 205          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G+ G++ AFG  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  EI+   + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G A+
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL 194          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV-------------KGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            +G  G+A AFG  +  + Y    ISG H+NPAV++GL++  +   ++ L Y+V Q LG +   GV+              GF   G YG  + G      GY+    L +E++ T + +  +  AT +KR+ +       AP+ IG  + L+HL +IP+T T +NPARS   A+
Sbjct:   33 IGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNG-YGEHSPG------GYSLQAALVSEVVLTGMFLLIILGAT-SKRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPARSTAVAL 193          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 62/203 (30.54%), Postives = 95/203 (46.80%), Query Frame = 3
Query:  249 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAIC-------------GAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 818
            AE I TF   +    +   V+ +      +G+ G++ AFG  +  + Y    ISG H+NPAVT+GL    +    + L Y++ Q  GAI              G  V KGF   G      G  +++A   T       E++ T + ++ +  AT  +  A        APL IG A+ ++HL +IP+T T +NPARS G A+
Sbjct:    8 AEAIGTFWLTFAGCGSA--VIAAGFPQVGIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQYSMMACFLT-------EVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPAL 195          
BLAST of CF838416 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 821
            RA +AE I TFLF++  V + M  G +      + VG+  +A A   ++ V+V     +SGGHINPAVTLGL    +++L R+  Y+  Q LG+   A ++  F+     G       V  H    G G+GA      E + TF L++ V++     R A     P+L  L +G  V    LA  P +G  +NPARS G A++
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTL-ACLLLAFLAVADSG-------VPVHAL--GAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRAVGGMGPLLVGLVVGANV----LAGGPFSGASMNPARSFGPALV 207          
The following BLAST results are available for this feature:
BLAST of CF838416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPZ_ECOL65.460e-1834.15Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO575.460e-1834.15Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
AQPZ_VIBVU7.132e-1830.18Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
AQPZ_VIBPA7.132e-1831.95Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
TIPA_PHAVU9.314e-1831.37Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP43_ORYSJ9.314e-1833.33Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
AQPZ_VIBVY2.075e-1730.18Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
AQPZ_PSEAE2.075e-1732.76Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
AQPZ_BRAJA2.075e-1730.54Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP44_MAIZE3.539e-1733.99Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838416 ID=CF838416; Name=CF838416; organism=Citrus sinensis; type=EST; length=823bp
CACAACATCAAACGGCCACAAACAAAAAAGCAAGTGCTTCTTATTGACTA
TTTTGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGT
TAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGG
CTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTC
TTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGC
CGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGA
TGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGG
ATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGC
TGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCT
TGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAG
TGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGC
CGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCT
ACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTT
GTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTC
TCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTGG
TTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCGAGG
AGTCTTGGAGCTGCAATCATCTA
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