CF838438

Overview
NameCF838438
Unique NameCF838438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBS (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain SDF) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  +S +EI++AYRKLAM++HPDR         +A+ KF+E  EAY +LSD  KR++YD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEEKFKEASEAYEILSDSEKRSMYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBC (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain ACICU) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  +S +EI++AYRKLAM++HPDR         +A+ KF+E  EAY +LSD  KR++YD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEEKFKEASEAYEILSDSEKRSMYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIB5 (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AB0057) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  +S +EI++AYRKLAM++HPDR         +A+ KF+E  EAY +LSD  KR++YD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEEKFKEASEAYEILSDSEKRSMYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIB3 (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AB307-0294) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  +S +EI++AYRKLAM++HPDR         +A+ KF+E  EAY +LSD  KR++YD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEEKFKEASEAYEILSDSEKRSMYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAD (Chaperone protein dnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  +S +EI++AYRKLAM++HPDR         +A+ KF+E  EAY VLSD  KR++YD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEDKFKEASEAYEVLSDSEKRSMYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNJC7_MOUSE (DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  118 EHK--L*KMEAESERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGK-AKVKFQEIQEAYSVLSDERKRTLYDAG 375
            EHK  L   + E ++  +  YY +LGV  ++S +EI++AYRK A+  HPDR +   + + K  + KF+E+ EA+++LSD +K+T YD+G
Sbjct:  362 EHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSG 450          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNJC7_HUMAN (DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  118 EHK--L*KMEAESERKVQPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGK-AKVKFQEIQEAYSVLSDERKRTLYDAG 375
            EHK  L   + E ++  +  YY +LGV  ++S +EI++AYRK A+  HPDR +   + + K  + KF+E+ EA+++LSD +K+T YD+G
Sbjct:  362 EHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSG 450          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPN (Chaperone protein dnaJ OS=Mycoplasma pneumoniae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKA-KVKFQEIQEAYSVLSDERKRTLYD 369
            YY VLGVS  ++ ++I+RA+RKLAMQ+HPDR       + K  + KF+E+ EAY VLSD  KR +YD
Sbjct:    8 YYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEAYEVLSDTEKRGMYD 74          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_FRAP2 (Chaperone protein dnaJ OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  163 QPSYYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            Q  YY +L VS  +S  EI+RAYRKLAM++HPDR         +A++KF+EI EAY +LSD+ KR+ YD
Sbjct:    3 QKCYYEILNVSKTASGVEIKRAYRKLAMKYHPDRNPDDK----EAEIKFKEISEAYEILSDDGKRSRYD 67          
BLAST of CF838438 vs. ExPASy Swiss-Prot
Match: DNAJ_ACICJ (Chaperone protein dnaJ OS=Acidiphilium cryptum (strain JF-5) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  172 YYSVLGVSVHSSVEEIRRAYRKLAMQWHPDRWTKTPSLLGKAKVKFQEIQEAYSVLSDERKRTLYD 369
            YY +LGVS  +S +E+++AYRKLAMQ+HPDR     +    A+ KF++I EAY VL DE+KR  YD
Sbjct:    6 YYELLGVSRGASADELKKAYRKLAMQYHPDRNPGDAA----AEQKFKDINEAYDVLKDEQKRAAYD 67          
The following BLAST results are available for this feature:
BLAST of CF838438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
DNAJ_ACIBS1.769e-1153.03Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBC1.769e-1153.03Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIB51.769e-1153.03Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIB31.769e-1153.03Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIAD1.769e-1154.55Chaperone protein dnaJ OS=Acinetobacter sp. (strai... [more]
DNJC7_MOUSE2.311e-1140.45DnaJ homolog subfamily C member 7 OS=Mus musculus ... [more]
DNJC7_HUMAN2.311e-1140.45DnaJ homolog subfamily C member 7 OS=Homo sapiens ... [more]
DNAJ_MYCPN2.311e-1152.24Chaperone protein dnaJ OS=Mycoplasma pneumoniae GN... [more]
DNAJ_FRAP22.311e-1152.17Chaperone protein dnaJ OS=Francisella philomiragia... [more]
DNAJ_ACICJ2.311e-1153.03Chaperone protein dnaJ OS=Acidiphilium cryptum (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838438 ID=CF838438; Name=CF838438; organism=Citrus sinensis; type=EST; length=845bp
GGCGCTCTGAATAGTGGATCCCCGGGCTGCAGGGCCATAACGAACACCAT
ATATATATACGAAGCTTTTGAGCCGCGAGTAGCATTCATAACCGACATGC
TTTTGATGTTTGAAGCTGAACACAAATTATGAAAGATGGAGGCAGAGAGT
GAAAGGAAAGTGCAGCCATCTTATTACAGCGTTCTGGGTGTGAGTGTGCA
CTCTTCTGTTGAAGAAATAAGGCGCGCTTATCGCAAGCTTGCTATGCAAT
GGCATCCTGATCGGTGGACAAAGACTCCATCTTTGTTGGGTAAAGCCAAG
GTTAAATTCCAGGAAATTCAAGAAGCCTATTCTGTTTTGTCAGATGAGAG
GAAGAGGACACTATATGATGCAGGGTTATATGACCCTGAAGAAGAAGAGG
AAGAGGGATTTTCAGATTTTGTGCAAGAAATGCTGTCTCTAATGGCTGAA
GCCAGGAAAGAGGACAAAAGCTACAGCATGGAGGAGCTGCAAACAATGTT
CATGGAAATGGCACAAGAATTTGAGCAGTCCTCGTGGTTCTGCGGATACC
CAGTTGCTGATGATTCCTGCTCCTTGGAGAGTACACAGTGGAATACGAAT
TCAATAGACAATAATAGAAACGCACAATTTGGTGCTTTTCCAGGGTGGCA
GTTCTATGGAGCAAGTGGTTTTTGCAGATAAAAGAATCCATTTGGATTCA
AACAGTGGATGCAAGATTTGAACATGAAAACGAGCAGTGAGCCTCTGATT
TTTGCTCTGATTATTTTTGGTGTGGAGACCATCACATTTTGTGGGAAACG
TCTTTGCCTCTGATGTCCTCGTTTCGGGGATTTGGCCTTTGAGCT
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