CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.964e-34
Identity = 66/93 (70.97%), Postives = 75/93 (80.65%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PAGKEHG PED+ RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVACG+IGLQG
Sbjct:   60 GPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 69/93 (74.19%), Postives = 73/93 (78.49%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PAGKEHG P+DE RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKTTGN GGRVACGI GLQG
Sbjct:   60 GPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   60 GPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   60 GPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 68/93 (73.12%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GK HG PED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 67/93 (72.04%), Postives = 73/93 (78.49%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PAGKEHG P D+NRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.153e-33
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PAG EHG PEDE RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.153e-33
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GK+HG PED NRHA            TATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.967e-33
Identity = 68/93 (73.12%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GK HG PED NRHA            TATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.356e-33
Identity = 68/93 (73.12%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GK+HG P+DE+RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   61 GPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_CARPA3.964e-3470.97Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_PAUKA5.177e-3474.19Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC5_MAIZE5.177e-3474.19Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC4_MAIZE5.177e-3474.19Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC1_BRAJU5.177e-3473.12Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_IPOBA8.831e-3472.04Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO1.153e-3374.19Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC2_BRAJU1.153e-3374.19Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_ARATH1.967e-3373.12Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_SOLCS3.356e-3373.12Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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