CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P G  HG P+D +RH              ATF + D Q+ +     +IGR++VV    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:  145 GDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 3
Query:    9 HSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 272
            H  P G  HG P+ + RH              A ++  D+ I L G  +IIGRA+VVHAD DDLG GG+  S  TGNAG R+ C +IG
Sbjct:   93 HFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P G  HG P+D +RH              ATF + D Q+ +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:  145 GDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGII 269
            GPH  P  K HG P+D+ RH              A F + D+ + + G ++++GR++VVHA  DDLGKG     E S  TGN G RVACG+I
Sbjct:   62 GPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  147 PNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            PNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:  156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P G  HG P+D +RH              A F + D Q+ +     +IGR++++    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:  145 GNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGG---HELSKTTGNAGGRVACGIIGL 275
            G H  P GK HG P D  +H              A   +    I L GP S+IG ++VVHA+ DDLG+G     E S  TGNAG R+ACG+IG+
Sbjct:  104 GDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGI 197          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 44/90 (48.89%), Postives = 49/90 (54.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXX-TATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P   EHG P    RH               A   + DN I L G  SIIGR +VVH + DDLG GG+ LSKTTGNAG RVACGI+
Sbjct:   60 GAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P G  HG P+D +RH              A F + D  + +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:  145 GDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269
            G H  P  +EHG P D  RH              AT ++ D  + L G  S++GR +V+H+D DD G+G    SKT G++G RV CGII
Sbjct:   60 GDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CCS_RAT2.045e-1444.94Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODC_PBCV13.489e-1444.32Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
CCS_MOUSE3.489e-1443.82Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODC_HAECO4.556e-1442.39Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODCP_POPTM1.731e-1374.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
CCS_HUMAN3.857e-1341.57Copper chaperone for superoxide dismutase OS=Homo ... [more]
SODE_ONCVO5.038e-1342.55Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC4_DICDI6.579e-1348.89Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
CCS_PIG1.122e-1241.57Copper chaperone for superoxide dismutase OS=Sus s... [more]
SODC6_DICDI1.466e-1240.45Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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