CF838444
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P G HG P+D +RH ATF + D Q+ + +IGR++VV DDLG+GGH LSK TGN+G R+ACGII Sbjct: 145 GDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 3 Query: 9 HSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 272 H P G HG P+ + RH A ++ D+ I L G +IIGRA+VVHAD DDLG GG+ S TGNAG R+ C +IG Sbjct: 93 HFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14 Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P G HG P+D +RH ATF + D Q+ + +IGR++V+ DDLG+GGH LSK TGN+G R+ACGII Sbjct: 145 GDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14 Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGII 269 GPH P K HG P+D+ RH A F + D+ + + G ++++GR++VVHA DDLGKG E S TGN G RVACG+I Sbjct: 62 GPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13 Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 3 Query: 147 PNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275 PNS++GRA+VVH DDLGKGGHELS +TGNAGGR+ACG++GL Sbjct: 156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13 Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P G HG P+D +RH A F + D Q+ + +IGR++++ DDLG+GGH LSK TGN+G R+ACGII Sbjct: 145 GNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13 Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGG---HELSKTTGNAGGRVACGIIGL 275 G H P GK HG P D +H A + I L GP S+IG ++VVHA+ DDLG+G E S TGNAG R+ACG+IG+ Sbjct: 104 GDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGI 197
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13 Identity = 44/90 (48.89%), Postives = 49/90 (54.44%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXX-TATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P EHG P RH A + DN I L G SIIGR +VVH + DDLG GG+ LSKTTGNAG RVACGI+ Sbjct: 60 GAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12 Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P G HG P+D +RH A F + D + + +IGR++V+ DDLG+GGH LSK TGN+G R+ACGII Sbjct: 145 GDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12 Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3 Query: 3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 269 G H P +EHG P D RH AT ++ D + L G S++GR +V+H+D DD G+G SKT G++G RV CGII Sbjct: 60 GDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148 The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 130
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bpback to top |