CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.476e-33
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GKEHG P D+NRHA            T  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG++GLQG
Sbjct:   62 GPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 67/93 (72.04%), Postives = 70/93 (75.27%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  PA KEHG PEDE RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG IGLQG
Sbjct:   60 GPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GKEHG P+DENRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   60 GPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 65/93 (69.89%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            GPH  P GKEHG PEDE+RHA                 + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   59 GPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 65/92 (70.65%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 278
            GPH  PAGKEHG PED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSKTTGNAGGR+ACG+IGLQ
Sbjct:   60 GPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 281
            G H  P   EHG PEDENRHA            T +F++ D+QIPL+GPNSIIGRAVVVHAD DDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   60 GAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P G  HG PEDENRHA             A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:  127 GPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:  129 GPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.783e-26
Identity = 57/91 (62.64%), Postives = 64/91 (70.33%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P G  HG P DE RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:  126 GPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.783e-26
Identity = 57/91 (62.64%), Postives = 63/91 (69.23%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P    HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG+IGL
Sbjct:  123 GPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_PINSY7.476e-3367.74Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_PANGI1.665e-3272.04Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC2_ORYSJ1.665e-3272.04Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC2_MAIZE2.175e-3269.89Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_ZANAE2.841e-3270.65Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_SOYBN2.841e-3270.97Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODCP_SOLCS2.107e-2761.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL3.594e-2762.64Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_PETHY1.783e-2662.64Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_ARATH1.783e-2662.64Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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