CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   62 GPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   62 GPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   62 GPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P+D+ RH              AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   61 GPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG P+DENRH              A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:   62 GPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.258e-20
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG P+DE RH              A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:   59 GPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 7.258e-20
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   60 GPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.238e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P+DE RH              A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+ACG+IG+
Sbjct:   60 GPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.238e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG PEDE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.617e-19
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG P D  RH              A  ++ D+Q+ L GP+S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_MACMU3.258e-2051.65Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU3.258e-2051.65Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA3.258e-2051.65Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_PIG4.255e-2050.55Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_CANGA4.255e-2051.65Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_PRIGL7.258e-2051.65Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_BOVIN7.258e-2051.65Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_CEREL1.238e-1950.55Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_CEBAP1.238e-1950.55Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_PAETN1.617e-1951.65Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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