CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 49/91 (53.85%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG   DENRH              +  TV DN I L GP S+IGR VVVHA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  KEHG PED+NRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:   62 GPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            G H  P    HG PED NRH                  + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSKTTGNAG RVACG+IG+
Sbjct:   92 GAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK+HG PED+ RH              A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R ACG+IGL
Sbjct:   62 GPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P DE RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P DE RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P G+ HG P DE RH              AT +V D+ I L GP S+IGR VVVH+  DDLGKG +E SK TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG PED NRH              +  TV D+ + L GP S+IGR +VVH   DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.144e-19
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:   60 GPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_PODAN2.112e-1953.85Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC1_DEBHA2.112e-1952.75Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODE_HAECO2.758e-1949.45Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_CANAL2.758e-1952.75Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_RAT3.602e-1950.55Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_MOUSE3.602e-1950.55Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_HYLLA3.602e-1949.45Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_BOTFU3.602e-1952.75Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_COLGL4.704e-1949.45Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_CAPHI6.144e-1950.55Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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