CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   63 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG P DE RH              A  +V D  + L GP+S+IGR VV+HA  DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GKEHG PEDENRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:   62 GPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GKEHG PEDENRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:   61 GPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 151          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG P D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 48/94 (51.06%), Postives = 55/94 (58.51%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG P DE RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAGGRVACGI+ +
Sbjct:  104 GPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAI 197          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K+HG P+DE RH              A   + D+ I LSG  S+IGR +VVH   DDLGKGG++ S  TGNAG R+ACG+IG+
Sbjct:   61 GPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG P D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_PONPY8.024e-1948.35Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_CLAPU8.024e-1950.55Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_ASPOR8.024e-1949.45Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_ASPFL8.024e-1949.45Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
SODC_CRYGA1.048e-1848.35Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODE_BRUPA1.369e-1851.06Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_PANTR1.369e-1848.35Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN1.369e-1848.35Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_RABIT1.788e-1848.35Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_CORMI1.788e-1849.45Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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