CF838444

Overview
NameCF838444
Unique NameCF838444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG PED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   62 GPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG   DENRH              +  ++ D  I L GP+S+IGR VV+HA  DDLGKGG++ S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIGV 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 46/91 (50.55%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P  K HG PEDE RH              +  ++ D  I L GP SI+GR VVVHA  DDLGKGG   S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG PED+ RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   62 GPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P GK HG PED+ RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   62 GPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.982e-18
Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 272
            G H  P  K HG P D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:   60 GSHFNPENKNHGAPGDTDRHVGDLGNVTAEGG-VAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 278
            GPH  PA K+H  P+DE+RH              A   + D +I L+GP SIIGR +V+H   DDLG+GG+E S  TGNAG R+ACG+IG +
Sbjct:   62 GPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 47/91 (51.65%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            GPH  P G  HG    E RH              A  TV DN + L GP S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   62 GPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            G H  P  K+HG P+DE RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   62 GAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838444 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    3 GPHSIPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 275
            G H  P  K HG PEDENRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:   62 GSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of CF838444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
SODC_ASPFU1.788e-1849.45Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_PAESI2.335e-1849.45Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_KLULA2.335e-1850.55Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_ASPNG2.335e-1848.35Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC2.335e-1848.35Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC2_XENLA3.982e-1851.11Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_XIPGL5.201e-1847.83Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_NEUCR5.201e-1851.65Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_HORSE5.201e-1849.45Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_ASHGO5.201e-1850.55Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838444 ID=CF838444; Name=CF838444; organism=Citrus sinensis; type=EST; length=431bp
CCGGACCCCACTCCATCCCTGCTGGAAAAGAACATGGACCTCCAGAGGAT
GAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGG
TACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAA
ATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTT
GGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAG
AGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGG
ACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATA
TATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCT
AAAACTTTGTTGTGTAAAAAAAAAAAAAAAA
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