CF838447

Overview
NameCF838447
Unique NameCF838447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:  126 QFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG V EGM++V+A+E+ GS +G+T+K + IADCGQ+
Sbjct:  111 QFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  111 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
The following BLAST results are available for this feature:
BLAST of CF838447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PPIA_HYLLA5.862e-1870.37Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN5.862e-1870.37Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO5.862e-1870.37Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE5.862e-1870.37Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_PIG9.998e-1868.52Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_DICDI9.998e-1874.07Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIA_BOVIN9.998e-1868.52Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_MOUSE1.306e-1768.52Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA1.306e-1768.52Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR1.306e-1768.52Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838447 ID=CF838447; Name=CF838447; organism=Citrus sinensis; type=EST; length=450bp
ACGTTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAG
CACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGTTATATTACATATCCTTTTTTATGTTTTTTAAAAAAAAAAAAAAAA
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