CF838447

Overview
NameCF838447
Unique NameCF838447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  174 QFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:  125 QFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:  118 QFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.556e-15
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:  118 QFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.556e-15
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:  136 QFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:  109 QFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 167
            QFF+CT KT WLDG+HVVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  200 QFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 164
            QFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:  111 QFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 137
            QFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  154 QFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 164
            QFF+ T    WLDGKHVVFG+VV G+DVVK +E +GS+SG+ +K ++I DCG+
Sbjct:  108 QFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
The following BLAST results are available for this feature:
BLAST of CF838447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PPIA_DROME1.222e-1564.81Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIE_SCHJA2.723e-1562.96Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CP19C_ARATH2.723e-1566.67Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CYP7_CAEEL3.556e-1566.67Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP1_CAEEL3.556e-1568.52Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_ECHGR4.644e-1568.52Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CP20B_ARATH4.644e-1569.09Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PAL4A_HUMAN6.707e-1460.38Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIF_BOVIN1.951e-1375.00Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_SCHMA1.951e-1358.49Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838447 ID=CF838447; Name=CF838447; organism=Citrus sinensis; type=EST; length=450bp
ACGTTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAG
CACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGTTATATTACATATCCTTTTTTATGTTTTTTAAAAAAAAAAAAAAAA
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