CF838447

Overview
NameCF838447
Unique NameCF838447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 167
            QFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V IADCG +
Sbjct:  142 QFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTN--KPVVIADCGQL 167
            QFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E    + GR    K V IADCG++
Sbjct:  151 QFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 167
            QFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  158 QFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            QFF+ T  T WLDG+HVVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  149 QFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 167
            QFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:  133 QFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CF838447 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query:    6 QFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 167
            QFF+ T  T WLDGKHVVFG+V+EGMDVV  IE   + +G  +KP   VVIADCG L
Sbjct:  141 QFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
The following BLAST results are available for this feature:
BLAST of CF838447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PPIB_CHICK2.385e-1158.18Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_BOVIN2.385e-1158.93Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_CRYNE3.115e-1158.18Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CP20A_ARATH3.115e-1157.41Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYP6_CAEEL5.314e-1158.18Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIB1_RHIOR9.064e-1161.40Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838447 ID=CF838447; Name=CF838447; organism=Citrus sinensis; type=EST; length=450bp
ACGTTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAG
CACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGTTATATTACATATCCTTTTTTATGTTTTTTAAAAAAAAAAAAAAAA
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