CF838448

Overview
NameCF838448
Unique NameCF838448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7965 contig Csv1_Contig7965:1..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.302e-22
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            K G I D  FKTFGCGSAIASSS  T  VKG  +EE   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K
Sbjct:  100 KDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSK 175          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.037e-16
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ++  I+DA F+TFGCGSAIASSS  TE VKG  ++E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 225
            +S +IVD+ F+TFGC SAIASSS  TE +KG  ++E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 225
            +S +IVD+ F+TFGC SAIASSS  TE +KG  ++E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ++  I+DA F+TFGCGSAIASSS  TE VKG  +++ L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGE 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D +S  I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   46 DPQSEIIEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
BLAST of CF838448 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            I D  FKTFGCGSAIA SS+ TE VKGK ++  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K
Sbjct:   53 IEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMK 125          
The following BLAST results are available for this feature:
BLAST of CF838448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_SCHPO1.302e-2271.05Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_AZOVI9.037e-1651.90Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_ANASP6.476e-1448.65Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ6.476e-1448.65Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_AZOCH1.105e-1348.10Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_KLEPN2.083e-1245.57Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]
NIFU_AQUAE1.350e-1149.32NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838448 ID=CF838448; Name=CF838448; organism=Citrus sinensis; type=EST; length=548bp
GATGAAAAGAGTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGTTG
TGGCTCTGCCATCGCTTCATCATCTGTTGCCACAGAATGGGTGAAAGGGA
AGCAGATGGAGGAAGTTTTGTCCATTAAGAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCGGTTAAGCTGCATTGTAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACATACCAAATCAAGTG
CCGCCTCAGAGGCAGCTCCTGCAGAGAAGGCTGCCGATGCTTGAAGATAT
TGATGAAAACATTTGAAAAATGATGTTAATGTGCTACTTGTGGAAGGTGT
ATCAGGGACACTGCAAATCCTAATATTGATGGTACATGGCAGGTGGTGCA
AGGGTTAATGGTTATTAATTAGAACTGCCATTTTGTACATTATGAATCTG
AATTGTGAGTGTGTAACTGAACCACTGAGAGTGTGATCCTCTGCATGGTT
CTAAGTTTGTTTTAATTATGTTGTTCAAATTTAAAAAAAAAAAAAAAA
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