CF838452

Overview
NameCF838452
Unique NameCF838452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10203 contig Csv1_Contig10203:492..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_SHIFL (Serine acetyltransferase OS=Shigella flexneri GN=cysE PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.213e-53
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  266 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG--GKEKTSSNEECPGESMDHT 793
            R RDPA   +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG    +K S + +     ++HT
Sbjct:   89 RTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHT 266          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_ECOLI (Serine acetyltransferase OS=Escherichia coli (strain K12) GN=cysE PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.213e-53
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  266 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG--GKEKTSSNEECPGESMDHT 793
            R RDPA   +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG    +K S + +     ++HT
Sbjct:   89 RTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHT 266          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_ECOL6 (Serine acetyltransferase OS=Escherichia coli O6 GN=cysE PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.213e-53
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  266 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG--GKEKTSSNEECPGESMDHT 793
            R RDPA   +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG    +K S + +     ++HT
Sbjct:   89 RTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHT 266          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_ECO57 (Serine acetyltransferase OS=Escherichia coli O157:H7 GN=cysE PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.213e-53
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  266 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG--GKEKTSSNEECPGESMDHT 793
            R RDPA   +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG    +K S + +     ++HT
Sbjct:   89 RTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHT 266          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_SALTY (Serine acetyltransferase OS=Salmonella typhimurium GN=cysE PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.930e-53
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  266 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG--GKEKTSSNEECPGESMDHT 793
            R RDPA   +S  LL  KGF A QA+R+ H LW + RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI ++VSIL  VTLGGTGK SGDRHPKI +GV+IGAGA ILGN+++G GAK+GAGSVVL  VP   TA G PAR+VG  G +K S + +     + HT
Sbjct:   89 RTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNKGRRALAIFLQNQVSVSFQVDIHPAAKIGRGIMLDHATGIVVGETAVIEDDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPGSDKPSMDMDQHFNGIHHT 266          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_HAEIN (Serine acetyltransferase OS=Haemophilus influenzae GN=cysE PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 101/156 (64.74%), Postives = 123/156 (78.85%), Query Frame = -3
Query:  326 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 793
            R RDPA   +S  LL  KGF A Q++R+ H LW Q+R+ LAL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK SGDRHPK+ +GV+IGAGA ILGN+++G+ AK+GA SVVL  VP  ATA G PAR+V
Sbjct:   85 RHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAI (Serine acetyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysE PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.438e-44
Identity = 92/155 (59.35%), Postives = 116/155 (74.84%), Query Frame = -3
Query:  326 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK-ASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 787
            RDPA   +   LL  KGF A +A+R++H LW   ++ L+L LQSRIS  F+VDIHPAA IG G++ DHATG+VIGE   I N+VSILH VTLGGTGK  S +RHP I  GV+IGAGA ILGN+++G GAK+GAGS+VL +VP+  T VG PA++V
Sbjct:   91 RDPAVNDYLTPLLYLKGFHALEAYRISHYLWNTGKKSLSLYLQSRISSEFSVDIHPAAFIGSGVMLDHATGIVIGEGVTIENDVSILHSVTLGGTGKNFSQNRHPTIRKGVVIGAGAKILGNIEVGSGAKIGAGSIVLKNVPSDVTVVGVPAKIV 245          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAP (Serine acetyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysE PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.998e-42
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = -3
Query:  299 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG-DRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSN 787
            RDP    +   LL  KGF A +A+R++H LW   R  L+  LQSRIS VF+VDIHPAA IG GI+ DHATG+VIGE  +I N+VSI H VTLGGTG  +G +RHP I   V IGAGA ILGN+++G+G KVGAGS+VL ++P   T VG PA+++   + ++ N
Sbjct:   91 RDPVVKHYLTPLLYLKGFHALEAYRLSHYLWNIKRYELSAYLQSRISTVFSVDIHPAASIGSGIMLDHATGIVIGEGVIIENDVSIFHSVTLGGTGSNTGKNRHPIIRKNVTIGAGAKILGNIEVGQGVKVGAGSIVLKNIPPFVTVVGVPAKIIKKIKNSNKN 254          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_SYNE7 (Serine acetyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=cysE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = -3
Query:  326 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFA-VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 787
            RDPA  +    LL Y GF A   HRVAH L+ Q R P+   L S +S +   V+IHP A++G+GI  DH  GVVIGETA++G+   I   VTLGGTGK SG RHP + + V++GAGA +LGN++IGE  ++GAGSVVL DVP+  T VG P R++
Sbjct:   15 RDPAARNGLEVLLCYPGFQALVCHRVAHWLY-QQRLPVIPRLLSHLSRLLTGVEIHPGARLGQGIFIDHGMGVVIGETAIVGDYCLIYQGVTLGGTGKQSGKRHPTLANNVVVGAGAKVLGNIQIGENVRIGAGSVVLRDVPSDCTVVGIPGRVI 168          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_SYNY3 (Serine acetyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=cysE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.593e-35
Identity = 77/155 (49.68%), Postives = 102/155 (65.81%), Query Frame = -3
Query:  326 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFA-VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 787
            RDPA  ++   L  Y G  A   HR +H+L+T    P    L S ++  F  ++IHP A+IG+G+  DH  GVVIGETA++G+   I   VTLGGTGK SG RHP +G+ V++GAGA +LGN+ IG+  ++GAGSVVL DVPA  T VG P R+V
Sbjct:   15 RDPAARNWLEVLFCYPGLQALLIHRFSHRLYTLGL-PFFPRLMSHLARFFTGIEIHPGAQIGQGVFIDHGMGVVIGETAIVGDYSLIYQGVTLGGTGKESGKRHPTLGENVVVGAGAKVLGNIAIGDNVRIGAGSVVLRDVPADFTVVGVPGRMV 168          
The following BLAST results are available for this feature:
BLAST of CF838452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CYSE_SHIFL2.213e-5360.11Serine acetyltransferase OS=Shigella flexneri GN=c... [more]
CYSE_ECOLI2.213e-5360.11Serine acetyltransferase OS=Escherichia coli (stra... [more]
CYSE_ECOL62.213e-5360.11Serine acetyltransferase OS=Escherichia coli O6 GN... [more]
CYSE_ECO572.213e-5360.11Serine acetyltransferase OS=Escherichia coli O157:... [more]
CYSE_SALTY4.930e-5360.11Serine acetyltransferase OS=Salmonella typhimurium... [more]
CYSE_HAEIN5.102e-5064.74Serine acetyltransferase OS=Haemophilus influenzae... [more]
CYSE_BUCAI1.438e-4459.35Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_BUCAP2.998e-4254.27Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_SYNE74.953e-3752.26Serine acetyltransferase OS=Synechococcus elongatu... [more]
CYSE_SYNY31.593e-3549.68Serine acetyltransferase OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838452 ID=CF838452; Name=CF838452; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTCCTATTGCTTACATTATTATTTACTCTTCCATTCAAGTTA
AACACTGAGCTTCATAAAACAAACAGTTCAGCACATTCTGATTTGATAGA
GATCCTCAAATCCACTAGAAAAAAAACTAAATATCTGTAACAGCTGCAAC
ATTGTAATGCAATATTACCACAATCTTCTTATACATACATAATACAGTCA
CTACTAGATAGCAAAATGAGATCAATTGATCAAATAATATAATCTGACCA
CTCAGAGATGAAGGATGTATGATCCATGGACTCCCCTGGACATTCCTCAT
TTGAAGAGGTCTTCTCCTTTCCTCCCACCAACCTTGCTGGGTTCCCCACT
GCAGTGGCTCTTGCTGGCACATCAATCAGTACCACCGACCCAGCCCCAAC
TTTCGCACCCTCTCCAATCTTCACGTTCCCTAATATGGTTGCTCCAGCCC
CGATCAACACCCCATCTCCAATCTTCGGGTGCCGATCCCCGCTTGCCTTC
CCCGTACCGCCAAGTGTAACATGATGCAAGATTGACACATTGTTGCCAAT
AACTGCGGTCTCACCTATTACCACACCTGTTGCATGATCAAACAAAATCC
CTTTCCCTATTTTTGCAGCTGGGTGTATATCAACAGCAAACACATCAGAG
ATACGGGATTGTAATGCTAGTGCCAGCGGCCTACGTGACTGAGTCCAGAG
CTTGTGTGCTACTCGGTGAGCCTGGCAAGCCAAGAAGCCTTTGTAATTGA
GGAGGCAGTGAGAGAAGGAAACGCAAGCGGGGTCACGGACACGGG
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