CF838452

Overview
NameCF838452
Unique NameCF838452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_HELPY (Serine acetyltransferase OS=Helicobacter pylori GN=cysE PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.649e-32
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = -3
Query:  326 DPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 784
            DPA  +    LL Y G  A   +R+AH L  +    +A AL      +  ++IHP AKIG+G+  DH  GVVIGET  IG++V+I H VTLGGTGK  G RHP +G+ V++GAGA +LG + +G+  K+GA +VVL D+P  +TAVG+ A+ +
Sbjct:   15 DPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTI 167          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: NIFP_AZOCH (Probable serine acetyltransferase OS=Azotobacter chroococcum mcd 1 GN=nifP PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32
Identity = 82/173 (47.40%), Postives = 100/173 (57.80%), Query Frame = -3
Query:  269 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDH 787
            RDPA  +    L  Y G  A   +R+AH+LW  +  P   A+  R   V  VDIHP A IG     DH   VVIGETA IG +V++ H VTLGGT  A G RHP +GD VL+GAGA ILG + IG  A+VGA SVV+ DVP   T VG P ++V  +E    N    G  +DH
Sbjct:   17 RDPAARTTFEVLTTYPGVHAIMLYRLAHRLWRPNALPRPAAVV-RARLVSNVDIHPGAVIGARFFIDHGACVVIGETAEIGRDVTLYHGVTLGGTTGAKGKRHPTLGDVVLVGAGAKILGPITIGANARVGANSVVVQDVPEGCTVVGIPGKVVKLREAGQLNPY--GIDLDH 186          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_HELPJ (Serine acetyltransferase OS=Helicobacter pylori J99 GN=cysE PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.183e-32
Identity = 70/153 (45.75%), Postives = 98/153 (64.05%), Query Frame = -3
Query:  326 DPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 784
            DPA  +    LL Y G  A   +R+AH L  +    +A AL      +  ++IHP AKIG+G+  DH  GVVIGET  IG++V+I H VTLGGTGK  G RHP +G+ V++GAGA +LG + +G+  ++GA +VVL D+P  +TAVG  A+ +
Sbjct:   15 DPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTI 167          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_STAXY (Serine acetyltransferase OS=Staphylococcus xylosus GN=cysE PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.396e-31
Identity = 70/154 (45.45%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  326 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 787
            +DPA  +    + +Y G  A  +H +AH+L+ + +  LA  +         ++IHP A+IG+ +  DH  GVVIGET  IG+NV+I   VTLGGTGK  G RHP IGD VLI AGA +LGN+ I     +GA SVVL  VP+ +T VG P  +V
Sbjct:   18 QDPAARTTLEVITSYAGVHAVWSHLIAHELYKKKKYVLARLISQVTRFFTGIEIHPGAQIGRRLFIDHGMGVVIGETCRIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNITINANVNIGANSVVLNSVPSYSTVVGIPGHIV 171          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: CYSE_BUCBP (Serine acetyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=cysE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.910e-29
Identity = 73/155 (47.10%), Postives = 101/155 (65.16%), Query Frame = -3
Query:  317 CVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHH--VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 775
            C SFS  LL+ KGF A QA+R+++ LW + ++ LAL  Q+RIS +F+VDIHPA+ IG GI+ D+A G+ IG+T+ I ++VS+L      LG   K S  + PKI +GV+IGA   ILGNV IGE  K+ A +VVL  VP  +      A++V  K
Sbjct:   98 CYSFS--LLHSKGFHALQAYRISNFLWCEEKKSLALYFQNRISCLFSVDIHPASMIGSGIVLDNAIGITIGQTSAIKDSVSVLSQSLALLGSAFKISSVQCPKINEGVIIGANVAILGNVVIGEKTKIQACTVVLQSVPPNSIVTSVLAKIVSFK 250          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: SRPH_SYNE7 (Serine acetyltransferase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  362 DPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRIS-DVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGD---------RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPA 784
            DPA  S S  L  Y G  A   HR+AH+L+ Q   PL   + + +S     +DIHP A IG     DH TGVVIGET VIG+ V I   VTLG       +         RHP I D V+I AGAT+LG + +G G+ +G    +   VPA
Sbjct:  150 DPAAQSISEILFCYPGITAITFHRLAHRLY-QLGLPLLARITAEVSHSETGIDIHPGAAIGGSFFIDHGTGVVIGETCVIGDRVRIYQAVTLGAKSFPRDETGALIKGQARHPVIEDDVVIYAGATLLGRITVGRGSTIGGNVWLTRSVPA 299          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: WCAB_SHIFL (Putative colanic acid biosynthesis acetyltransferase wcaB OS=Shigella flexneri GN=wcaB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 53/140 (37.86%), Postives = 71/140 (50.71%), Query Frame = -3
Query:  329 AHRVAH--KLWTQSR-------RPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 721
            A+RVAH   +W +          PL +  +      F  +I  AA IG+     H   VVI +  V G++ +I H VT+G  G A     P IG+GV +GA   ILG++ +G    VGAGSVVL  VP  A  VG  AR+
Sbjct:   20 AYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG-ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARV 158          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: WCAB_ECOLI (Putative colanic acid biosynthesis acetyltransferase wcaB OS=Escherichia coli (strain K12) GN=wcaB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 53/140 (37.86%), Postives = 71/140 (50.71%), Query Frame = -3
Query:  329 AHRVAH--KLWTQSR-------RPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 721
            A+RVAH   +W +          PL +  +      F  +I  AA IG+     H   VVI +  V G++ +I H VT+G  G A     P IG+GV +GA   ILG++ +G    VGAGSVVL  VP  A  VG  AR+
Sbjct:   20 AYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG-ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARV 158          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: WCAB_ECO57 (Putative colanic acid biosynthesis acetyltransferase wcaB OS=Escherichia coli O157:H7 GN=wcaB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 53/140 (37.86%), Postives = 71/140 (50.71%), Query Frame = -3
Query:  329 AHRVAH--KLWTQSR-------RPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 721
            A+RVAH   +W +          PL +  +      F  +I  AA IG+     H   VVI +  V G++ +I H VT+G  G A     P IG+GV +GA   ILG++ +G    VGAGSVVL  VP  A  VG  AR+
Sbjct:   20 AYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG-ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARV 158          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_OENOB (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=dapH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  296 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNE 628
            I+  A+IG+  + D   G V+G  A++G +  I     L G  + +  +  ++GD VLIGA A I+  V+IG+GA VGAG+VV+ DVPA     G PA+++   ++ + N+
Sbjct:  115 INIGAEIGEATMID--MGAVLGGRAIVGKHSHIGAGAVLAGVVEPASAQPVRVGDNVLIGANAVIIEGVQIGDGAVVGAGAVVINDVPAHTVVAGVPAKVIKQIDEKTENK 223          
The following BLAST results are available for this feature:
BLAST of CF838452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CYSE_HELPY1.649e-3246.41Serine acetyltransferase OS=Helicobacter pylori GN... [more]
NIFP_AZOCH2.813e-3247.40Probable serine acetyltransferase OS=Azotobacter c... [more]
CYSE_HELPJ8.183e-3245.75Serine acetyltransferase OS=Helicobacter pylori J9... [more]
CYSE_STAXY1.396e-3145.45Serine acetyltransferase OS=Staphylococcus xylosus... [more]
CYSE_BUCBP2.910e-2947.10Serine acetyltransferase OS=Buchnera aphidicola su... [more]
SRPH_SYNE71.710e-2141.72Serine acetyltransferase, plasmid OS=Synechococcus... [more]
WCAB_SHIFL5.329e-1537.86Putative colanic acid biosynthesis acetyltransfera... [more]
WCAB_ECOLI5.329e-1537.86Putative colanic acid biosynthesis acetyltransfera... [more]
WCAB_ECO575.329e-1537.86Putative colanic acid biosynthesis acetyltransfera... [more]
DAPH_OENOB4.988e-1336.942,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838452 ID=CF838452; Name=CF838452; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTCCTATTGCTTACATTATTATTTACTCTTCCATTCAAGTTA
AACACTGAGCTTCATAAAACAAACAGTTCAGCACATTCTGATTTGATAGA
GATCCTCAAATCCACTAGAAAAAAAACTAAATATCTGTAACAGCTGCAAC
ATTGTAATGCAATATTACCACAATCTTCTTATACATACATAATACAGTCA
CTACTAGATAGCAAAATGAGATCAATTGATCAAATAATATAATCTGACCA
CTCAGAGATGAAGGATGTATGATCCATGGACTCCCCTGGACATTCCTCAT
TTGAAGAGGTCTTCTCCTTTCCTCCCACCAACCTTGCTGGGTTCCCCACT
GCAGTGGCTCTTGCTGGCACATCAATCAGTACCACCGACCCAGCCCCAAC
TTTCGCACCCTCTCCAATCTTCACGTTCCCTAATATGGTTGCTCCAGCCC
CGATCAACACCCCATCTCCAATCTTCGGGTGCCGATCCCCGCTTGCCTTC
CCCGTACCGCCAAGTGTAACATGATGCAAGATTGACACATTGTTGCCAAT
AACTGCGGTCTCACCTATTACCACACCTGTTGCATGATCAAACAAAATCC
CTTTCCCTATTTTTGCAGCTGGGTGTATATCAACAGCAAACACATCAGAG
ATACGGGATTGTAATGCTAGTGCCAGCGGCCTACGTGACTGAGTCCAGAG
CTTGTGTGCTACTCGGTGAGCCTGGCAAGCCAAGAAGCCTTTGTAATTGA
GGAGGCAGTGAGAGAAGGAAACGCAAGCGGGGTCACGGACACGGG
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