CF838452

Overview
NameCF838452
Unique NameCF838452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10203 contig Csv1_Contig10203:492..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LEUCK (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Leuconostoc citreum (strain KM20) GN=dapH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G V+G  A++G    I     L G  + +  +  +IGD VL+GA A ++  V++G+GA V AG++V  DVPA     G PA+++
Sbjct:  116 INIGAEIGSGTMID--MGAVLGGRAIVGEQSHIGAGAVLAGVIEPASAQPVRIGDHVLVGANAVVIEGVQVGDGAVVAAGAIVTKDVPANTVVAGVPAKII 214          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_EXIS2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  296 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNE 628
            I+  A IG G + D     V+G    IG NV +     + G  +        I DGVLIGA A IL  V++G+ A V AGSVV  DVPA +   G PAR++  K++ ++ +
Sbjct:  117 INIGASIGDGTMID--MNAVVGARGTIGKNVHVGAGAVVAGVLEPPSKTPVIIEDGVLIGANAVILEGVRVGKDAVVAAGSVVTEDVPAGSVVAGTPARVIKQKDEKTAEK 225          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRZP (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain P1031) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRZJ (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain JJA) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRR6 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRPS (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain CGSP14) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRPN (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRPJ (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRPI (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRP7 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain 70585) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
The following BLAST results are available for this feature:
BLAST of CF838452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DAPH_LEUCK1.604e-1136.632,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_EXIS22.095e-1137.842,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRZP2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRZJ2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRR62.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRPS2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRPN2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRPJ2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRPI2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRP72.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838452 ID=CF838452; Name=CF838452; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTCCTATTGCTTACATTATTATTTACTCTTCCATTCAAGTTA
AACACTGAGCTTCATAAAACAAACAGTTCAGCACATTCTGATTTGATAGA
GATCCTCAAATCCACTAGAAAAAAAACTAAATATCTGTAACAGCTGCAAC
ATTGTAATGCAATATTACCACAATCTTCTTATACATACATAATACAGTCA
CTACTAGATAGCAAAATGAGATCAATTGATCAAATAATATAATCTGACCA
CTCAGAGATGAAGGATGTATGATCCATGGACTCCCCTGGACATTCCTCAT
TTGAAGAGGTCTTCTCCTTTCCTCCCACCAACCTTGCTGGGTTCCCCACT
GCAGTGGCTCTTGCTGGCACATCAATCAGTACCACCGACCCAGCCCCAAC
TTTCGCACCCTCTCCAATCTTCACGTTCCCTAATATGGTTGCTCCAGCCC
CGATCAACACCCCATCTCCAATCTTCGGGTGCCGATCCCCGCTTGCCTTC
CCCGTACCGCCAAGTGTAACATGATGCAAGATTGACACATTGTTGCCAAT
AACTGCGGTCTCACCTATTACCACACCTGTTGCATGATCAAACAAAATCC
CTTTCCCTATTTTTGCAGCTGGGTGTATATCAACAGCAAACACATCAGAG
ATACGGGATTGTAATGCTAGTGCCAGCGGCCTACGTGACTGAGTCCAGAG
CTTGTGTGCTACTCGGTGAGCCTGGCAAGCCAAGAAGCCTTTGTAATTGA
GGAGGCAGTGAGAGAAGGAAACGCAAGCGGGGTCACGGACACGGG
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