CF838452

Overview
NameCF838452
Unique NameCF838452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10203 contig Csv1_Contig10203:492..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRP4 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRP2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRGC (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LACCB (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactobacillus casei (strain BL23) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G V+G  A++G +  I     L G  +    +   IGD V+IGA A +L    +GEGA + AG+VV+ DVPA     G PA+++
Sbjct:  116 INIGAEIGAGTMID--MGAVLGGRAIVGKHCHIGAGTVLAGVVEPPSAKPVTIGDHVMIGANAVVLEGTTVGEGAVIAAGAVVINDVPAHTVVAGVPAKVI 214          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LACC3 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=dapH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G V+G  A++G +  I     L G  +    +   IGD V+IGA A +L    +GEGA + AG+VV+ DVPA     G PA+++
Sbjct:  116 INIGAEIGAGTMID--MGAVLGGRAIVGKHCHIGAGTVLAGVVEPRSAKPVTIGDHVMIGANAVVLEGTTVGEGAVIAAGAVVINDVPAHTVVAGVPAKVI 214          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRSV (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus sanguinis (strain SK36) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  + +     ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPASAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARVI 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LACLM (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG+G + D   G V+G  A +G N  I     L G  + +     ++GD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  138 INIGAEIGEGTMID--MGAVLGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQVGSGSVVAAGAIVTQDVPENVVVAGVPARII 236          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRU0 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  293 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEE 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++  KE  S  ++
Sbjct:  114 INIGAEIGPGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTEDVPENVVVAGVPARII--KEIDSQTQQ 221          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LEUMM (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  293 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEE 628
            I+  A+IG   + D   G V+G  A++G N  I     L G  + +  +  +IG+ VL+GA A ++  V++G+GA V AG++V  DVPA     G PA+++  KE  S  ++
Sbjct:  115 INIGAEIGANTMID--MGAVLGGRAIVGENSHIGAGAVLAGVIEPASAQPVRIGNNVLVGANAVVIEGVQVGDGAVVAAGAIVTKDVPANTVVAGVPAKVI--KEIDSKTQQ 222          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LACLA (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactococcus lactis subsp. lactis GN=dapH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG+G + D   G ++G  A +G N  I     L G  + +     ++GD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  138 INIGAEIGEGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQVGSGSVVAAGAIVTQDVPENVVVAGVPARII 236          
The following BLAST results are available for this feature:
BLAST of CF838452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DAPH_STRP42.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRP22.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRGC2.737e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LACCB2.737e-1137.622,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LACC32.737e-1137.622,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRSV3.574e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LACLM3.574e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRU04.668e-1134.822,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LEUMM4.668e-1134.822,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LACLA4.668e-1134.652,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838452 ID=CF838452; Name=CF838452; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTCCTATTGCTTACATTATTATTTACTCTTCCATTCAAGTTA
AACACTGAGCTTCATAAAACAAACAGTTCAGCACATTCTGATTTGATAGA
GATCCTCAAATCCACTAGAAAAAAAACTAAATATCTGTAACAGCTGCAAC
ATTGTAATGCAATATTACCACAATCTTCTTATACATACATAATACAGTCA
CTACTAGATAGCAAAATGAGATCAATTGATCAAATAATATAATCTGACCA
CTCAGAGATGAAGGATGTATGATCCATGGACTCCCCTGGACATTCCTCAT
TTGAAGAGGTCTTCTCCTTTCCTCCCACCAACCTTGCTGGGTTCCCCACT
GCAGTGGCTCTTGCTGGCACATCAATCAGTACCACCGACCCAGCCCCAAC
TTTCGCACCCTCTCCAATCTTCACGTTCCCTAATATGGTTGCTCCAGCCC
CGATCAACACCCCATCTCCAATCTTCGGGTGCCGATCCCCGCTTGCCTTC
CCCGTACCGCCAAGTGTAACATGATGCAAGATTGACACATTGTTGCCAAT
AACTGCGGTCTCACCTATTACCACACCTGTTGCATGATCAAACAAAATCC
CTTTCCCTATTTTTGCAGCTGGGTGTATATCAACAGCAAACACATCAGAG
ATACGGGATTGTAATGCTAGTGCCAGCGGCCTACGTGACTGAGTCCAGAG
CTTGTGTGCTACTCGGTGAGCCTGGCAAGCCAAGAAGCCTTTGTAATTGA
GGAGGCAGTGAGAGAAGGAAACGCAAGCGGGGTCACGGACACGGG
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