CF838452

Overview
NameCF838452
Unique NameCF838452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10203 contig Csv1_Contig10203:492..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRZT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A++G N  +     L G  +       ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPVSAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRTD (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRT2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRT1 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRSY (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus suis (strain 05ZYH33) GN=dapH PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     ++GD VL+GA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGPGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRS2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus suis (strain 98HAH33) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     ++GD VL+GA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGPGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_STRMU (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus mutans GN=dapH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG+G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A I+  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGEGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASADPVRIGDNVLVGANAVIIEGVQVGSGSVVAAGAIVTQDVPDNVVVAGVPARVI 212          
BLAST of CF838452 vs. ExPASy Swiss-Prot
Match: DAPH_LACLS (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dapH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  326 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 628
            I+  A+IG+G + D   G V+G  A +G N  I     L G  + +     ++GD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR +
Sbjct:  139 INIGAEIGEGTMID--MGAVLGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQVGSGSVVAAGAIVTQDVPENVVVAGVPARTI 237          
The following BLAST results are available for this feature:
BLAST of CF838452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DAPH_STRZT6.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRTD6.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRT26.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRT16.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRSY6.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRS26.097e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRMU7.963e-1136.632,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_LACLS7.963e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838452 ID=CF838452; Name=CF838452; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTCCTATTGCTTACATTATTATTTACTCTTCCATTCAAGTTA
AACACTGAGCTTCATAAAACAAACAGTTCAGCACATTCTGATTTGATAGA
GATCCTCAAATCCACTAGAAAAAAAACTAAATATCTGTAACAGCTGCAAC
ATTGTAATGCAATATTACCACAATCTTCTTATACATACATAATACAGTCA
CTACTAGATAGCAAAATGAGATCAATTGATCAAATAATATAATCTGACCA
CTCAGAGATGAAGGATGTATGATCCATGGACTCCCCTGGACATTCCTCAT
TTGAAGAGGTCTTCTCCTTTCCTCCCACCAACCTTGCTGGGTTCCCCACT
GCAGTGGCTCTTGCTGGCACATCAATCAGTACCACCGACCCAGCCCCAAC
TTTCGCACCCTCTCCAATCTTCACGTTCCCTAATATGGTTGCTCCAGCCC
CGATCAACACCCCATCTCCAATCTTCGGGTGCCGATCCCCGCTTGCCTTC
CCCGTACCGCCAAGTGTAACATGATGCAAGATTGACACATTGTTGCCAAT
AACTGCGGTCTCACCTATTACCACACCTGTTGCATGATCAAACAAAATCC
CTTTCCCTATTTTTGCAGCTGGGTGTATATCAACAGCAAACACATCAGAG
ATACGGGATTGTAATGCTAGTGCCAGCGGCCTACGTGACTGAGTCCAGAG
CTTGTGTGCTACTCGGTGAGCCTGGCAAGCCAAGAAGCCTTTGTAATTGA
GGAGGCAGTGAGAGAAGGAAACGCAAGCGGGGTCACGGACACGGG
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