CF838460

Overview
NameCF838460
Unique NameCF838460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:222..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ CM+V GP+++ A ++CG V+G +APCI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    5 MKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 2
Query:   14 VALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +A K+   +VLCM+V  P  A+AITCGQVT +LAPC+ YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:    3 IAGKIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 2
Query:    5 SQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            + +++LKL   +VLCM+V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:    2 ASSMSLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            ITCGQV+ SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            ITCGQV+ +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   14 VALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            ++LKL   +VLCM+V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:    1 MSLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.177e-31
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   38 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            LV+CM+V  P++  AI+CG VTG L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   12 LVMCMIVA-PMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.177e-31
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CF838460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_BRANA1.107e-3156.64Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_TOBAC1.107e-3159.65Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_GOSHI3.222e-3156.30Non-specific lipid-transfer protein OS=Gossypium h... [more]
LTP1_MORNI3.222e-3170.33Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTPB_BRAOT5.495e-3156.64Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_PRUDO5.495e-3162.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_GOSHI5.495e-3157.76Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP5_LENCU7.177e-3161.68Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP3_BRANA7.177e-3153.98Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA1.224e-3055.75Non-specific lipid-transfer protein 1 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838460 ID=CF838460; Name=CF838460; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAAACCGTTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TGCTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGATGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
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