CF838460

Overview
NameCF838460
Unique NameCF838460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:222..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.506e-25
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   23 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP---CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            K V+A+++  L+    +A A+TCGQV   LAPCI+Y  + G +  P   CC+GVR+LN+AA TT DRQT C CLKQ   ++  L P+   G+P  CGV+IPY IS STDCS+V
Sbjct:    8 KYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMY--ATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ++CG V   LAPCI YLRS GP+PV CCNGV++L  +A TT DR+TAC CL  A+ SI  +N   A GLP  CGV+IPYKIS ST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.712e-24
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            LKL + +++CMLVT P++++A I+CG VTGSL  C  YL  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AA ++   LN   A  LP AC V I Y IS  T+C+ VR
Sbjct:    5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.982e-24
Identity = 56/119 (47.06%), Postives = 74/119 (62.18%), Query Frame = 2
Query:    5 SQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +++++LKL   +VLC+LV  PL+  AI+  QV  SL PC+ Y+R     P P   C G+RSL +AAR   DRQ AC C+K  A  I ++N   A GLP  C V IPYKIS S DC +V+
Sbjct:    2 ARSMSLKLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.498e-24
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 2
Query:   26 LVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPV-PCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            L++A ++ ML   P +A A+ CGQV   + PC+ Y++ GGP P   CCNGVR L+  A+++ DRQT CNCLK  A  I NLN NNA  +P  C V++PY IS   DCS++
Sbjct:    8 LMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.450e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   35 ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            A+V  ML+    +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:   13 AMVAAMLIVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.450e-23
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 2
Query:    5 SQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            SQ V + LV+A++L        +  AI+CGQV+ +L+PCI Y R +G   P  CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:    7 SQLVLVALVAAMLLVA------ADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.893e-23
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    5 SQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +Q V + +V+A++L        +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:    7 TQLVLVAMVAAMLLVA------TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 2
Query:   23 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            K+++ L++  +     +   I CG VT +LA C+ YL + GP+P  CC GV+SL   A+TTPDR+  C CLK A   I  LN +    LP  CGVSIPY IS ST+C  +
Sbjct:    6 KIITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.194e-23
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    5 SQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            +Q V + +V+A++L        +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC CLK  A SI  +N     G+P  CGVS+P+ IS+STDC+KV
Sbjct:    7 TQLVLVAMVAAMLLVA------TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
The following BLAST results are available for this feature:
BLAST of CF838460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP4_ORYSJ4.506e-2550.44Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP5_VITSX1.004e-2458.89Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP5_ARATH1.712e-2451.75Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP6_GOSHI4.982e-2447.06Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_HORVU8.498e-2448.18Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLT42_HORVU1.450e-2350.93Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT41_HORVU1.450e-2348.31Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLT43_HORVU1.893e-2347.46Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLTPC_ARATH3.229e-2344.55Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_HORVU7.194e-2346.15Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838460 ID=CF838460; Name=CF838460; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAAACCGTTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TGCTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGATGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
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