CF838460

Overview
NameCF838460
Unique NameCF838460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.189e-17
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 2
Query:    2 KSQTVALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            K  ++ + +++ +V+  L+  P  + AITC  VTG+L PC+ YLRSGG     CC G + L  A RT  DR+TAC C K AA  +  + P+ A  LP  CG+S    I+ + +C+ +
Sbjct:    2 KGTSMGVAILAMIVMAQLMVHP--SVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 AITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            A+TC  VT +L PC+ YL+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA    +LN   A  L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   80 AITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            A+TC  VT +L PC+ YL+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA    +LN   A  L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            + CGQV  SLA CI +L  G   P   CC GV++L   A T+ DR+ AC C+K AA   P +  + A  LP+ CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   71 SAQAITCGQVTGSLAPCIVYLRSG-GPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            S  AI+C  V   L PC+ YL SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+  + P  A  L   CG S+P   S + DC+ V
Sbjct:   22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 2
Query:    2 KSQTVALKLVSALVLCMLVTGPLSAQ-AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVS-IPYKISISTDCSKV 352
            K    A+ +V  +V  M V G +  + AI+C QV  ++ PC  YL      P   CC  +R L++  + TPDRQ  CNCLK  A S   +    A  LP  C V+ +   IS + DCSKV
Sbjct:    4 KKMVEAVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CF838460 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            + CGQV  +L+ C+ +L      P + CC GV  L   A T  D++ AC C+K AA   PN+  + A  LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CF838460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_HELAN1.189e-1738.46Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP_AMACA1.552e-1746.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.552e-1746.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPA_RICCO9.417e-1542.86Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH2.740e-1443.16Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP_PINTA5.168e-1337.50Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO4.375e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838460 ID=CF838460; Name=CF838460; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAAACCGTTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TGCTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGATGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
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