CF838475

Overview
NameCF838475
Unique NameCF838475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_BOVIN (40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27L_RAT (40S ribosomal protein S27-like protein OS=Rattus norvegicus GN=Rps27l PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27L_MOUSE (40S ribosomal protein S27-like protein OS=Mus musculus GN=Rps27l PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27L_HUMAN (40S ribosomal protein S27-like protein OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27L_BOVIN (40S ribosomal protein S27-like protein OS=Bos taurus GN=RPS27L PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.788e-12
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            F I+TVFSH+QTVV C  C +VLCQPTGG+A+LT+GCSFR+K
Sbjct:   41 FKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_CAEEL (40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    9 SRLFHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            S  F I+TVFSH+ TVVVC  C +VLCQPT G+A+LTEGCSFR+K
Sbjct:   38 SGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_DICDI (40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   24 ITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149
            ITTVFSH+Q VV+C +C +V+ QPTGGRAR+T GC  R+K D
Sbjct:   44 ITTVFSHAQNVVICSSCSTVIAQPTGGRARITAGCRLRQKSD 85          
The following BLAST results are available for this feature:
BLAST of CF838475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS27_MOUSE7.260e-1478.5740S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN7.260e-1478.5740S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]
RS27_BOVIN7.260e-1478.5740S ribosomal protein S27 OS=Bos taurus GN=RPS27 P... [more]
RS27L_RAT7.260e-1478.5740S ribosomal protein S27-like protein OS=Rattus n... [more]
RS27L_MOUSE7.260e-1478.5740S ribosomal protein S27-like protein OS=Mus musc... [more]
RS27L_HUMAN7.260e-1478.5740S ribosomal protein S27-like protein OS=Homo sap... [more]
RS27L_BOVIN7.260e-1478.5740S ribosomal protein S27-like protein OS=Bos taur... [more]
RS27_HOMAM1.788e-1271.4340S ribosomal protein S27 OS=Homarus americanus GN... [more]
RS27_CAEEL6.796e-1268.8940S ribosomal protein S27 OS=Caenorhabditis elegan... [more]
RS27_DICDI7.513e-1164.2940S ribosomal protein S27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838475 ID=CF838475; Name=CF838475; organism=Citrus sinensis; type=EST; length=332bp
GTGAAATGTCCCGGTTGTTTCACATAACAACTGTTTTCAGCCACTCTCAA
ACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGCCCACTGG
TGGTCGTGCCAGACTCACTGAGGGATGCTCGTTCAGAAGAAAGGGTGACT
AAGTGTTGCCTAAATGATAAATCTTTTCATTTTGGTTATGATGTATTGAG
TTTGGTAGAAGGTTTAAGGTCAGACAGTGTTTTAACCTTTTGTTTCAAAT
TTAATTGACTCAATGTAGTGGATGATCTTATGTTTGAAAGAAAATATTTT
TAAGTGAATGTTTTTCAAAAAAAAAAAAAAAA
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