CF838480

Overview
NameCF838480
Unique NameCF838480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            YRGVR+RPWG++AAEIRDP + TRVWLGTF+T              FRG +AK NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDSTTV 215
            K +RGVRQRPWG+WAAEIRDP R  RVWLGT++T               +GP A  NFP   +  V
Sbjct:   96 KKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEV 161          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFP 200
            +RGVR+RPWG++AAEIRDP + TRVWLGTF++               RGP+AK NFP P
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 3
Query:   21 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFP 200
            +YRGVR+RPWG++AAEIRDP + TRVWLGTF+T               RG +AK NFP P
Sbjct:   11 HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K+YRGVRQRPWGK+AAEIRDP R+ TRVWLGTF+T               RG +A +NFP
Sbjct:  143 KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K+YRGVRQRPWGK+AAEIRDP R+ TRVWLGTF+T               RG +A +NFP
Sbjct:  136 KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 33/58 (56.90%), Postives = 35/58 (60.34%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 191
            K YRGVRQRPWGKWAAEIRDP +  R+WLGTF T               RGP A  NF
Sbjct:  115 KKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            YRGVR+RPWG++AAEIRDP + +RVWLGTF+T              FRG +AK NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K+YRGVRQRPWGK+AAEIRDP +R +RVWLGTF+T               RG +A LNFP
Sbjct:  154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDSTT 212
            K YRGVRQRPWGK+AAEIRDP   TR+WLGTF T               +GP+A  NF  P + T
Sbjct:  103 KKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPT 167          
The following BLAST results are available for this feature:
BLAST of CF838480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF78_ARATH1.814e-1257.89Ethylene-responsive transcription factor 4 OS=Arab... [more]
PTI6_SOLLC2.369e-1250.00Pathogenesis-related genes transcriptional activat... [more]
ERF3_TOBAC2.369e-1254.24Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF81_ARATH4.041e-1255.00Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF5_TOBAC5.278e-1258.33Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY5.278e-1258.33Ethylene-responsive transcription factor 5 OS=Nico... [more]
CRF4_ARATH5.278e-1256.90Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF76_ARATH6.893e-1256.14Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF102_ARATH6.893e-1258.33Ethylene-responsive transcription factor 5 OS=Arab... [more]
CRF6_ARATH6.893e-1252.31Ethylene-responsive transcription factor CRF6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838480 ID=CF838480; Name=CF838480; organism=Citrus sinensis; type=EST; length=772bp
GAAAGAGGAGAGGGATTAAGAATTACAGAGGGGTGAGGCAGAGGCCGTGG
GGAAAATGGGCGGCTGAGATTCGTGACCCGAGGAGGGCGACCCGTGTCTG
GCTGGGGACGTTCAACACGGCGGAGGAGGCAGCGAGGGCGTACGATAAGG
CCGCCGTTGAGTTCCGTGGGCCCAGGGCCAAGCTTAATTTCCCATTTCCC
GATAGCACGACGGTGGCAACAGCATACGAGCAGCAGCAGCAGGGGGAGTC
ATCGCATTCACAGCAGCCACAACAAGTGGTGTCGCAAGACAGCAATCAAA
GTGTTGCGAGAACTAATAATAATAATGGGAATTCGGCGGCGGCAACAGAA
GCAATGGGGGATCAGATTCAGAGTGACTTTTGGGAGATGATTGGAGAAGA
CGAGATTCAACAGTGGATGACGATGATGGATTTTGGCACCGATTCCTCTG
ACTCTGCTAATACTGCCACTGGTCTTACTTCATGATTAGTTAATTAAGTA
ATTAGAATGTTTGTTTGTTTCCTTGTTTTTTTTTTTAAAAAAAAAAATTA
GTTAATTACAGTGTTTAATCAATTAATTCAGCCAATTATTTGATTGTATC
TGTAAAGAAGAGATAAGATCATCAATTTGGAGATCGATTATGTGAACAAT
AAATATATCTCTTACTAACTCAGTTCAACATCGGTCCCAATTATTTTATT
GATTTGATTTTCCAAAATTTTATCCGGAGGTGCTGCTGCTGAACTGAGGA
TTGGCTTGCTGATTAGTGACTA
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