CF838480

Overview
NameCF838480
Unique NameCF838480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            YRGVR+RPWG++AAEIRDP + +RVWLGTF++               RGP+AK NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K YRGVRQR WGKW AEIR PR  TR+WLGTF+T               RG  A+LNFP
Sbjct:  185 KLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            ++YRGVR RPWGK+AAEIRDP RR TRVWLGTF T               RG +A LNFP
Sbjct:  135 RHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 3
Query:    3 KRRGIKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            ++R +K Y+G+R R WGKW AEIR+P + +R+WLG++ T               RGP A+LNFP
Sbjct:   21 RKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K+YRGVRQRPWGK+AAEIRDP +   RVWLGTF T               RG RA LNFP
Sbjct:  115 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDP-RRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K+YRGVRQRPWGK+AAEIRDP +   RVWLGTF T               RG RA LNFP
Sbjct:  146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 3
Query:   21 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDSTTVAT 221
            ++RGVRQR WGKW AEIR+P R +R+WLGTF T                GP A+LNFP  D++ V +
Sbjct:   78 SFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRSDASEVTS 144          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDST 209
            +RGVR+RPWG++AAEIRDP +  RVWLGTF++               RGP+AK NFP   S+
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSS 89          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 3
Query:   24 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 191
            YRGVR+RPWG++AAEIRDP + TRVWLGTF+T              FRG +AK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 3
Query:   15 IKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            +K YRGVRQR WGKW AEIR P+  TR+WLGTF T               RG  A+LNFP
Sbjct:  108 VKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167          
The following BLAST results are available for this feature:
BLAST of CF838480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF83_ARATH1.176e-1154.39Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF53_ARATH1.176e-1155.93Ethylene-responsive transcription factor ERF053 OS... [more]
EF103_ARATH1.176e-1158.33Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF08_ARATH1.536e-1143.75Ethylene-responsive transcription factor ERF008 OS... [more]
EF101_ARATH1.536e-1158.33Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH1.536e-1158.33Ethylene-responsive transcription factor 1A OS=Ara... [more]
DRE2A_ARATH1.536e-1147.76Dehydration-responsive element-binding protein 2A ... [more]
ERF82_ARATH2.005e-1150.00Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF79_ARATH2.005e-1157.14Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF57_ARATH2.005e-1153.33Ethylene-responsive transcription factor ERF057 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838480 ID=CF838480; Name=CF838480; organism=Citrus sinensis; type=EST; length=772bp
GAAAGAGGAGAGGGATTAAGAATTACAGAGGGGTGAGGCAGAGGCCGTGG
GGAAAATGGGCGGCTGAGATTCGTGACCCGAGGAGGGCGACCCGTGTCTG
GCTGGGGACGTTCAACACGGCGGAGGAGGCAGCGAGGGCGTACGATAAGG
CCGCCGTTGAGTTCCGTGGGCCCAGGGCCAAGCTTAATTTCCCATTTCCC
GATAGCACGACGGTGGCAACAGCATACGAGCAGCAGCAGCAGGGGGAGTC
ATCGCATTCACAGCAGCCACAACAAGTGGTGTCGCAAGACAGCAATCAAA
GTGTTGCGAGAACTAATAATAATAATGGGAATTCGGCGGCGGCAACAGAA
GCAATGGGGGATCAGATTCAGAGTGACTTTTGGGAGATGATTGGAGAAGA
CGAGATTCAACAGTGGATGACGATGATGGATTTTGGCACCGATTCCTCTG
ACTCTGCTAATACTGCCACTGGTCTTACTTCATGATTAGTTAATTAAGTA
ATTAGAATGTTTGTTTGTTTCCTTGTTTTTTTTTTTAAAAAAAAAAATTA
GTTAATTACAGTGTTTAATCAATTAATTCAGCCAATTATTTGATTGTATC
TGTAAAGAAGAGATAAGATCATCAATTTGGAGATCGATTATGTGAACAAT
AAATATATCTCTTACTAACTCAGTTCAACATCGGTCCCAATTATTTTATT
GATTTGATTTTCCAAAATTTTATCCGGAGGTGCTGCTGCTGAACTGAGGA
TTGGCTTGCTGATTAGTGACTA
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