CF838481

Overview
NameCF838481
Unique NameCF838481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5773 contig Csv1_Contig5773:309..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   90 MQIFVKTLTGKTITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 317
            M I VKTLTGK I L+++ +D +  +  R+++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 2 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  318 MQIFVKTLTGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            M I VKTLTGK I L+++ +D +   K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   90 MQIFVKTLTGKTITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 317
            M + VKTLTGK I++E++ SD + ++   +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  318 MQIFVKTLTGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            M + VKTLTGK I++E++ SD +   K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  102 VKTLTGKTITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            VK L G    + V +S T+  +  +I  K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T++  K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:    7 VKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   96 IFVKTLTGKTITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            + V++     +T +    D++  +   ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++   KA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  102 VKTLTGKTITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            VK L G    + + SS ++  +  +I  K G+   QQRL    +G  L+D   LA   +   ST+ LV+ +    + I V+   G++ T EV  + T+   K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:    7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
BLAST of CF838481 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  126 ITLEVESSDTIDNVGGRIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVESSDTIEGGKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 545
            +T +   SD +  +   I+ +  +    Q L+   K L+  R L+ Y I KE+T+HL L++         + +      G+   L V  S ++   K  I++   +PP +Q +   GK+LEDG+ +ADYNI+  S L L     GG
Sbjct:   16 MTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
The following BLAST results are available for this feature:
BLAST of CF838481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
UBL1_SCHPO1.625e-1652.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST8.918e-1551.32NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UCRP_MOUSE1.682e-1332.89Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UBD_HUMAN4.894e-1330.13Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_HUMAN5.411e-1233.11Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
UBD_RAT1.205e-1129.45Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838481 ID=CF838481; Name=CF838481; organism=Citrus sinensis; type=EST; length=676bp
TTATATTAAACCCCTTTAAAAAAAAAAGAAAAAGAAACAAAAAACATACT
TAGTTTATATACCAAGGCTCCCAATCTCAGCCTTCCAACATGCAGATCTT
TGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCCG
ACACGATCGACAACGTCGGGGGTAGGATCCAGGACAAGGAAGGGATTCCA
CCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCG
CACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTCC
TCCGTCTCCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGACCGGGAAG
ACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGAGGGCGGGAAGGC
AAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGAGGCTCATCT
TCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACATC
CAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCA
GATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCCTGGAGGTGGAGA
GCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGG
ATTCCTCCGGACCAGCAGAGGCTCAT
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