CF838486

Overview
NameCF838486
Unique NameCF838486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 81/175 (46.29%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGP-PTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGP--------TKVTTASSTPAALSPKV 583
            GSG  DD+       DG   RKKLRLSK+Q+ +LE           KQK  LA +L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKRW   L ++N+RL++E+ +LRA+K  P P   S        A+TL+MCP C RV T      P        +  T +SS+ AA +  V
Sbjct:   99 GSGVDDDD-----GADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAV 268          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  122 SGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPH--SCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGT 589
            + +  D+E+S     GG  RKKLRLSK+Q+ +LE           KQK  LA QL LKPRQVEVWFQNRRAR+KLKQTE++CE LKR   +LT++NRRL RE++ELRA+K+        H       P +TL+MCP CERV + A        TT +++ AA +  V T
Sbjct:  142 AAAASDDEDS-----GGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAA-------TTTRNNSGAAPARPVPT 298          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  122 SGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPH--SCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGT 589
            + +  D+E+S     GG  RKKLRLSK+Q+ +LE           KQK  LA QL LKPRQVEVWFQNRRAR+KLKQTE++CE LKR   +LT++NRRL RE++ELRA+K+        H       P +TL+MCP CERV + A        TT +++ AA +  V T
Sbjct:  142 AAAASDDEDS-----GGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAA-------TTTRNNSGAAPARPVPT 298          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 78/157 (49.68%), Postives = 103/157 (65.61%), Query Frame = 2
Query:  122 SGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV-------TTTAVDKGPTK 538
            S   DDEE       G   RKKLRL+K+QS LLE           KQK+ LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+   +LT++NRRLQ+E+++L+A+K+  P  +       +PA+TL+MCP CER+        TTAVD+   K
Sbjct:  113 SDDHDDEE-------GVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMH------MPAATLTMCPSCERLGGGGVGGDTTAVDEETAK 256          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVT 508
            GS  + D+E      DG   RKKLRLSK+QS +LE           KQK+ LA QL L+ RQVEVWFQNRRAR+KLKQTE++CE+L+R   +LTE+NRRLQ+EV ELRA+K+ P   +        P +TL+MCP CE V+
Sbjct:  114 GSRGISDDE------DGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYM-----HMSPPTTLTMCPSCEHVS 243          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 78/172 (45.35%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  134 DDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-AMKVGPPTVISPHSCEPLPA---STLSMCPRCER---VTTTAVDKGPTKVTTASSTPAALSPKVGTPA 595
            DDE+       GG  RKKLRLSKEQS  LE           KQK +LA +L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LT +NRRLQREV ELR A++    +    +    LPA   +   +CP CE    V   A +    +V      PAA++     P+
Sbjct:  142 DDEDNG-----GGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAASESFSPRVFAGGGAPAAITAAAAVPS 308          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 73/138 (52.90%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  125 GSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 505
            G+ D+EE+      G   RKKLRLSK+QS  LE           KQK  LA +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+NRRLQ+E  ELR +K+ P         +  P +TL MCP CERV
Sbjct:  116 GTSDEEEDG-----GETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSP-----QFYGQMTPPTTLIMCPSCERV 243          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 76/172 (44.19%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  134 DDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE----LRAMKVGPPTVISPHSCEPLPASTLSMCPRCER---VTTTAVDKGPTKVTTASSTPAALSPKVGTPA 595
            DDE+       GG  RKKLRLSKEQS  LE           KQK +LA +L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR    LT +NRRLQREV E    LR      P +   H       +   +CP CE    V   A +    +V      PAA++     P+
Sbjct:  142 DDEDNG-----GGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAASESFSPRVFAGGGAPAAITAAAAVPS 308          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 505
            +G   RKKLRL+K+QS LLE           KQK+ LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LK+   +L ++N RLQ+E++EL+ +K+  P  +       +PASTL+ CP CER+
Sbjct:  107 EGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMH------MPASTLTKCPSCERI 225          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 73/138 (52.90%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  125 GSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERV 505
            G+ D+EE+      G   RKKLRLSK+QS +LE           KQK  LA +L L  RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+NRRL++E  ELRA+K+ P         +  P +TL MCP CERV
Sbjct:  120 GTSDEEED----YGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLY-----GQMSPPTTLLMCPSCERV 248          
The following BLAST results are available for this feature:
BLAST of CF838486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX2_ORYSI1.349e-3146.29Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX1_ORYSJ5.126e-3147.93Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI5.126e-3147.93Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HAT22_ARATH5.126e-3149.68Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT4_ARATH9.668e-3052.48Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX7_ORYSI4.062e-2845.35Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HAT2_ARATH5.305e-2852.90Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HOX7_ORYSJ6.928e-2844.19Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HAT9_ARATH9.049e-2852.00Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT1_ARATH1.182e-2752.90Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838486 ID=CF838486; Name=CF838486; organism=Citrus sinensis; type=EST; length=779bp
TCATCATCACCCCCTTCAACAAGCCGGAGGTTCTGCGATGAAGGATTTGG
ACATAAACCAAGTACCATCAGAAGATACTGAATGGAATAATTGGAACACA
GCAACAGCAACAACAACAGGATCAGGAAGCATGGACGATGAAGAAGAGAG
CTGCATCAACGTTGACGGCGGCCCTCCTCGCAAAAAGCTTCGCCTCTCCA
AAGAACAGTCTCGTCTTCTCGAAAAGCAGAAAGAAGAACTGGCTACGCAG
TTGAAGCTGAAGCCACGTCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGC
CAGGAGCAAGCTGAAGCAAACGGAGATGGAATGCGAGTACTTGAAGAGAT
GGTTTGGTTCATTGACTGAACAAAACAGGAGGCTGCAAAGGGAAGTGGAG
GAGCTCAGGGCTATGAAGGTGGGCCCACCCACCGTGATCTCTCCCCACAG
TTGTGAGCCACTCCCGGCATCAACCCTATCAATGTGTCCACGGTGTGAGC
GCGTGACCACCACCGCCGTTGACAAGGGCCCCACCAAGGTCACCACCGCC
TCCTCCACTCCCGCGGCATTGTCTCCTAAAGTCGGGACGCCGGCCCTCCA
GTCACGGTAGCCTTCGGCGGCCTGATGGAAAGTTAAACGTGGCAAAACAT
TAATCAAAAGCAAAAGGAGAAATTAGTTTTAGAGGATGTTCATAGGAAAA
GAAATATGCAAGTGTGCATGCAAGATACCAATGAAGATAAGATACTATCA
TTGATATATATGTGTGGTATCTGATCTGC
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