CF838486

Overview
NameCF838486
Unique NameCF838486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  167 GGPPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 553
            GG  RKKL+L+KEQS LLE            QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR   SLTE+N++L+ E+ ELR +                P    A+ +++CP CE+VT      G T  +++S
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27
Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  167 GGPPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 553
            GG  RKKL+L+KEQS LLE            QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR   SLTE+N++L+ E+ ELR +                P    A+ +++CP CE+VT      G T  +++S
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGG------PPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRC 496
            G G  DD++    +  GG        RKKLRL+ EQ+ LLE            +K+ELA +L L  RQVEVWFQNRRAR+KLKQTE +C+ L+RW   L   N RL+R++ ELR     PP          L  +T  +CP C
Sbjct:   90 GRGDDDDDDGDRRSPSGGGGDEEGASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPPV-------SGLAVATPVVCPSC 225          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  182 KKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLS 481
            KK RL+ EQ + LEK           +K ELA  L L+PRQ+ +WFQNRRARSK KQ E + + LKR F SL ++N  LQ + ++L+A       V++  S EP+ +  L+
Sbjct:   71 KKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQ------VMALKSREPIESINLN 175          
The following BLAST results are available for this feature:
BLAST of CF838486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX18_ORYSI2.633e-2748.61Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX18_ORYSJ4.491e-2748.61Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX26_ORYSJ1.399e-2042.66Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATB23_ARATH6.295e-1342.34Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838486 ID=CF838486; Name=CF838486; organism=Citrus sinensis; type=EST; length=779bp
TCATCATCACCCCCTTCAACAAGCCGGAGGTTCTGCGATGAAGGATTTGG
ACATAAACCAAGTACCATCAGAAGATACTGAATGGAATAATTGGAACACA
GCAACAGCAACAACAACAGGATCAGGAAGCATGGACGATGAAGAAGAGAG
CTGCATCAACGTTGACGGCGGCCCTCCTCGCAAAAAGCTTCGCCTCTCCA
AAGAACAGTCTCGTCTTCTCGAAAAGCAGAAAGAAGAACTGGCTACGCAG
TTGAAGCTGAAGCCACGTCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGC
CAGGAGCAAGCTGAAGCAAACGGAGATGGAATGCGAGTACTTGAAGAGAT
GGTTTGGTTCATTGACTGAACAAAACAGGAGGCTGCAAAGGGAAGTGGAG
GAGCTCAGGGCTATGAAGGTGGGCCCACCCACCGTGATCTCTCCCCACAG
TTGTGAGCCACTCCCGGCATCAACCCTATCAATGTGTCCACGGTGTGAGC
GCGTGACCACCACCGCCGTTGACAAGGGCCCCACCAAGGTCACCACCGCC
TCCTCCACTCCCGCGGCATTGTCTCCTAAAGTCGGGACGCCGGCCCTCCA
GTCACGGTAGCCTTCGGCGGCCTGATGGAAAGTTAAACGTGGCAAAACAT
TAATCAAAAGCAAAAGGAGAAATTAGTTTTAGAGGATGTTCATAGGAAAA
GAAATATGCAAGTGTGCATGCAAGATACCAATGAAGATAAGATACTATCA
TTGATATATATGTGTGGTATCTGATCTGC
back to top