CF838486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27 Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 2 Query: 167 GGPPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 553 GG RKKL+L+KEQS LLE QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR SLTE+N++L+ E+ ELR + P A+ +++CP CE+VT G T +++S Sbjct: 110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27 Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 2 Query: 167 GGPPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLP----ASTLSMCPRCERVTTTAVDKGPTKVTTAS 553 GG RKKL+L+KEQS LLE QK ELA QLKLKPRQVEVWFQNRRAR+KLKQTE++CE+LKR SLTE+N++L+ E+ ELR + P A+ +++CP CE+VT G T +++S Sbjct: 110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSS 253
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20 Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 119 GSGSMDDEEESCINVDGG------PPRKKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRC 496 G G DD++ + GG RKKLRL+ EQ+ LLE +K+ELA +L L RQVEVWFQNRRAR+KLKQTE +C+ L+RW L N RL+R++ ELR PP L +T +CP C Sbjct: 90 GRGDDDDDDGDRRSPSGGGGDEEGASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPPV-------SGLAVATPVVCPSC 225
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2 Query: 182 KKLRLSKEQSRLLEK-----------QKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLS 481 KK RL+ EQ + LEK +K ELA L L+PRQ+ +WFQNRRARSK KQ E + + LKR F SL ++N LQ + ++L+A V++ S EP+ + L+ Sbjct: 71 KKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQ------VMALKSREPIESINLN 175 The following BLAST results are available for this feature:
BLAST of CF838486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838486 ID=CF838486; Name=CF838486; organism=Citrus sinensis; type=EST; length=779bpback to top |