CF838514

Overview
NameCF838514
Unique NameCF838514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838514 vs. ExPASy Swiss-Prot
Match: BGLX_ECOLI (Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) GN=bglX PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 75/266 (28.20%), Postives = 126/266 (47.37%), Query Frame = 2
Query:    2 DKAVNIAKGADHVVLIMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKHDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKM---RPQATSGNPGRTYRFYE--GKEVFPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFEL 784
            D+AV  AK +D VV ++G  Q    E   R D+ +P  Q++LI  + +A  KP++LVL+ G P  +   K D+   +IL   + G  G  A+A+V+FGD+NP G+LPM+ +P+   ++P+    +   RP         T R+++     ++PFG GL                     S +T  V +  +    S P +  +     K   ++ V N G+  G   V ++++       RP+KQL GF+ + L   E   + F +
Sbjct:  493 DEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAAL-KATGKPLVLVLMNGRP--LALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMS-FPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGL---------------------SYTTFTVSDVKL----SAPTMKRD----GKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPI 725          
BLAST of CF838514 vs. ExPASy Swiss-Prot
Match: BGLS_RHIRD (Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 79/274 (28.83%), Postives = 116/274 (42.34%), Query Frame = 2
Query:    5 KAVNIAKGADHVVLIMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKHDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRT---------YRFYEGKEV---FPFGCGLXXXXXXXXXXXXXQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 790
            +AV  A+ +D V+L++G +   + E LD  D+ LPGRQ+ELI  VAE     V++VL  GGP+++ +      + ++L   YPG+    ALA+V+FGD  P GRLP T+         +TD    P    G  G           YR ++ +E+   FPFG GL                                       P+L           VT+ V N G+ AG   V L+V        RP K+L  F  + L        V +++P
Sbjct:  535 EAVETARKSDIVLLLVGREGEWDTEGLDLPDMRLPGRQEELIEAVAE-TNPNVVVVLQTGGPIEMPWL---GKVRAVLQMWYPGQELGNALADVLFGDVEPAGRLPQTFPKALTDNSAITD---DPSIYPGQDGHVRYAEGIFVGYRHHDTREIEPLFPFGFGLGYTRFTW------------------------------GAPQLSGTEMGADGLTVTVDVTNIGDRAGSDVVQLYVHSPNARVERPFKELRAFAKLKLAPGATGTAVLKIAP 771          
The following BLAST results are available for this feature:
BLAST of CF838514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BGLX_ECOLI1.730e-1928.20Periplasmic beta-glucosidase OS=Escherichia coli (... [more]
BGLS_RHIRD1.240e-1728.83Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838514 ID=CF838514; Name=CF838514; organism=Citrus sinensis; type=EST; length=829bp
TGACAAGGCAGTGAACATAGCAAAAGGGGCTGATCATGTGGTGCTGATTA
TGGGATTGGACCAAACTCAAGAGAAGGAGGAGCTTGATCGTGTGGACTTG
GTGCTTCCTGGAAGGCAACAAGAACTCATCACCAGAGTTGCAGAAGCTGC
CAAGAAACCAGTTATTCTGGTTCTTCTTTGTGGAGGTCCTGTTGATATAA
CTTTTGCCAAGCACGACCGCAATATTGGAAGCATTCTGTGGGCAGGTTAT
CCTGGTGAAGCTGGAGCGGTTGCACTAGCAGAAGTCATTTTCGGTGACCA
TAATCCAGGAGGAAGATTACCGATGACTTGGTATCCACAAGATTATATAA
AAGTACCAATGACGGACATGAAAATGCGACCTCAAGCAACTTCAGGTAAT
CCAGGACGTACATATCGATTCTACGAAGGGAAAGAGGTCTTCCCATTCGG
TTGTGGTCTCAGCTATTCAAAGTATTCCTACAAGTTCAAATCTGTCAGCC
AAAACAAGCTTTATTTAAATCAGTCATCATCTACAAAGATGGTTGAAAAT
CAAGATGTAGTCCATTACAAGTCTGTTCCAGAGTTGGGCACAGAATTTTG
TGAGACAAGGAAGTTCTTGGTTACCATCGGAGTTAAAAATCATGGAGAGA
TGGCGGGTAAGCACCCGGTGTTGCTGTTTGTGAAGCCTGCAAGGCGTGGA
AATGGGAGGCCAATAAAGCAGTTGGTTGGATTCCAAAGTGTGATTCTAAA
TGCCAAAGAAAAAGCTGAAATTGTTTTTGAGCTTAGCCCCTGTGAAAGCC
TCAGCAGAGCTAGGGAAGATGGCTTGATG
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