CF838515

Overview
NameCF838515
Unique NameCF838515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:38..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.079e-13
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   70 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR 327
            MGTLGRA++TVG  IR T QA  R+G  LQG+++ ++ LSRHRTL+              VAP+AS+IGDVQ+ +GS I Y  V R
Sbjct:    1 MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLIT-------------VAPNASVIGDVQINKGSFISYASVSR 73
The following BLAST results are available for this feature:
BLAST of CF838515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UMP6_ARATH1.079e-1350.00Uncharacterized protein At1g47420, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838515 ID=CF838515; Name=CF838515; organism=Citrus sinensis; type=EST; length=825bp
CAAAACCTCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGA
TCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCG
TTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGC
CGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAAC
TCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTG
TTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCA
TCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGT
TGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGT
CTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACT
GTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTT
TGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATG
GCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCT
GGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGA
TGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG
CACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTT
GAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTC
AATGCTCGGTGTTGTTCGTGAAACT
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