CF838516

Overview
NameCF838516
Unique NameCF838516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_HALOH (Isoleucyl-tRNA synthetase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=ileS PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.243e-44
Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = 2
Query:  251 IIVASDLVPTL--EAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +++A +LV  +  EA+     V+ +   G++LEN R  HP ++R   ++I GD++T E GTG VHTAPGHG +DY+  LKY L I +P+D+ G FTEEA +F+G+    D N  V K LDE+  L+      H+YP+ WR K   IFRAT+QWFAS+E  ++ A+ AI  V W P     R++ M S R+DWCI RQ+ WGVPI
Sbjct:  267 LVMARELVDRVMEEAEVENYKVVGQAFKGTELENKRCRHPFEDRDS-ILILGDHVTLEQGTGCVHTAPGHGHDDYLVGLKYDLDIYAPMDNRGVFTEEAERFAGM-YYDDVNKEVTKILDEKGLLMNLSFISHQYPHCWRCKGALIFRATDQWFASIEAIKEEALKAIHSVDWYPAWGEERMANMISERTDWCISRQKKWGVPI 468          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_SHELP (Isoleucyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ileS PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.624e-44
Identity = 95/212 (44.81%), Postives = 129/212 (60.85%), Query Frame = 2
Query:  230 KDQKKVFIIVASDLVPTLEAKWGTKL-VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            KD  K  IIVA +LV +   ++G +L  +  T+ G  LE  R+ HP  +   PV+IG D++T +SGTG+VHTAPGHGQ+D+V   KYGL + +PV D G +  +   F+G  V    N  VV  L+E+ +L+    Y H YP+ WR K P IFRAT QWF S++  G R  ++  I + +W+P    +RI  M   R DWCI RQRTWGVPI
Sbjct:  268 KDGSKRAIIVAQELVESCIERYGAELHSVLGTVKGQALELLRFKHPFYDFDVPVIIG-DHVTVDSGTGVVHTAPGHGQDDFVIGQKYGLEVANPVGDNGVYKPDTEFFAGQHVF-KANDNVVALLEEKGALLNHVAYRHSYPHCWRHKTPIIFRATPQWFISMDQKGLRTQSLSEIEKTQWIPDWGQSRIEKMVENRPDWCISRQRTWGVPI 477          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_PERMH (Isoleucyl-tRNA synthetase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ileS PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.624e-44
Identity = 96/218 (44.04%), Postives = 132/218 (60.55%), Query Frame = 2
Query:  227 LKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKF-SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG-------FRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            L+ + KV+I VA DL+ +   K G +  + K + G +LE   Y HP  +R   + +  +++   +GTGLVH APGHGQEDY+   +YG+   +PVDDEG+FT+EA +F  GL V  + N  +V+ L E   L+  E  +H YP+ WR K P IFRAT QWF S++G        R  A+  I +VKW+P    NRI +M   R DWCI RQR+WGVPI
Sbjct:  258 LRSEDKVYI-VAKDLLESFSEKTGIEGEVIKEVKGRELEFLEYRHPFIDRVSKIYLS-EFVELGTGTGLVHMAPGHGQEDYIIGQRYGVEAFAPVDDEGRFTDEAPEFIQGLRVF-EANERIVEKLRENGVLLHHETVKHSYPHCWRCKNPVIFRATPQWFISMDGITEKGETLRGEALKEIERVKWIPHWGENRIKSMIENRPDWCISRQRSWGVPI 472          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_LISMO (Isoleucyl-tRNA synthetase OS=Listeria monocytogenes GN=ileS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.121e-44
Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +VA  L+P+L  K G +   + KT+ GS+L+     HP  +R   +V+ G++ T E+GTG VHTAPGHG++D++   KY L IL+P+DD G FTEEA  F G+      N  V + L+E  +L+  E   H YP+DWRTKKP IFRAT QWFAS++ FR   + A+  V W P     R+  M   R DW I RQR WGVP+
Sbjct:  262 VVAEALLPSLREKLGFEDATVVKTVRGSELDRVVTKHPFYDRDS-LVMNGEHATAEAGTGAVHTAPGHGEDDFLIGKKYDLEILAPLDDRGVFTEEAPGFEGV-FYDTANKMVTEKLEEVGALLKMEFITHSYPHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWVISRQRAWGVPL 461          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_LISIN (Isoleucyl-tRNA synthetase OS=Listeria innocua GN=ileS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.121e-44
Identity = 92/202 (45.54%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +VA  L+P+L  K G +   + KT+ GS+L+     HP  +R   +V+ G++ T E+GTG VHTAPGHG++D++   KY L IL+P+DD G FTEEA  F G+      N  V + L+E  +L+  E   H YP+DWRTKKP IFRAT QWFAS++ FR   + A+  V W P     R+  M   R DW I RQR WGVP+
Sbjct:  262 VVAEALLPSLREKLGFEDATVVKTVRGSELDRVVTKHPFYDRDS-LVMNGEHATAEAGTGAVHTAPGHGEDDFLIGKKYDLEILAPLDDRGVFTEEAPGFEGV-FYDTANKMVTEKLEEVGALLKMEFITHSYPHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWVISRQRAWGVPL 461          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_LISMH (Isoleucyl-tRNA synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ileS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 91/202 (45.05%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +VA  L+P+L  K G +   + KT+ GS+L+     HP  +R   +V+ G++ T E+GTG VHTAPGHG++D++   KY L +L+P+DD G FTEEA  F G+      N  V + L+E  +L+  E   H YP+DWRTKKP IFRAT QWFAS++ FR   + A+  V W P     R+  M   R DW I RQR WGVP+
Sbjct:  262 VVAEALLPSLREKLGFEDATVVKTVRGSELDRVVTKHPFYDRDS-LVMNGEHATAEAGTGAVHTAPGHGEDDFLIGKKYDLEVLAPLDDRGVFTEEAPGFEGV-FYDTANKMVTEKLEEVGALLKMEFITHSYPHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWVISRQRAWGVPL 461          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_LISMF (Isoleucyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ileS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 91/202 (45.05%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +VA  L+P+L  K G +   + KT+ GS+L+     HP  +R   +V+ G++ T E+GTG VHTAPGHG++D++   KY L +L+P+DD G FTEEA  F G+      N  V + L+E  +L+  E   H YP+DWRTKKP IFRAT QWFAS++ FR   + A+  V W P     R+  M   R DW I RQR WGVP+
Sbjct:  262 VVAEALLPSLREKLGFEDATVVKTVRGSELDRVVTKHPFYDRDS-LVMNGEHATAEAGTGAVHTAPGHGEDDFLIGKKYDLEVLAPLDDRGVFTEEAPGFEGV-FYDTANKMVTEKLEEVGALLKMEFITHSYPHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWVISRQRAWGVPL 461          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_LISMC (Isoleucyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ileS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 91/202 (45.05%), Postives = 124/202 (61.39%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +VA  L+P+L  K G +   + KT+ GS+L+     HP  +R   +V+ G++ T E+GTG VHTAPGHG++D++   KY L +L+P+DD G FTEEA  F G+      N  V + L+E  +L+  E   H YP+DWRTKKP IFRAT QWFAS++ FR   + A+  V W P     R+  M   R DW I RQR WGVP+
Sbjct:  262 VVAEALLPSLREKLGFEDATVVKTVRGSELDRVVTKHPFYDRDS-LVMNGEHATAEAGTGAVHTAPGHGEDDFLIGKKYDLEVLAPLDDRGVFTEEAPGFEGV-FYDTANKMVTEKLEEVGALLKMEFITHSYPHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWVISRQRAWGVPL 461          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYIM_SCHPO (Isoleucyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=ism1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 85/203 (41.87%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  254 IVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            +++ +LVP L+   G K +   +     + +  Y +P+  +Q    +  +Y+T + GTG+VH APGHG EDY+  L+  L   SP+DD G++T+EA  G   GL+VLGDG   V+  +  Q  ++   PY+H+YPYDWRT KP I RAT QWF S+E  R+ A+ A+  VK +PP +  R+    +GR +WCI RQR WG+PI
Sbjct:  293 LMSDNLVPNLDFMQGAKRLA--SCPSDIISSFTYENPLLPKQSFPFLQSNYVTNDIGTGIVHVAPGHGMEDYLLGLENNLRPFSPLDDYGRYTKEALDGSLEGLEVLGDGGKKVISIMKNQNMIVKVSPYKHRYPYDWRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPPNSRARLLGFLNGRPEWCISRQRAWGLPI 493          
BLAST of CF838516 vs. ExPASy Swiss-Prot
Match: SYI_HALHL (Isoleucyl-tRNA synthetase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ileS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.618e-44
Identity = 95/213 (44.60%), Postives = 124/213 (58.22%), Query Frame = 2
Query:  224 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQAINRISAMTSGRSDWCIXRQRTWGVPI 856
            V  D  +  ++ A  L  TL+        +     G+DLE     HP  +RQ PVV+G +++TT+ GTG VHTAPGHGQED+     YGL + +PVD  G F E+   F+GL+V  D N  VV+ L+ + +L   E Y H YP+ WR K P IFRAT QWF  ++  G R+ A+  I  V+W+P     RI AM  GR DWCI RQR WGVPI
Sbjct:  267 VALDHSERLVLAAELLEATLQRAGVECYEVVGRCRGADLEGLSLQHPFLDRQVPVVLG-EHVTTDGGTGCVHTAPGHGQEDFEVGQCYGLEVTNPVDGAGCFFEDTEHFAGLNVF-DANPRVVEVLESRGALFHHEKYRHSYPHCWRHKTPVIFRATPQWFIDLDRHGMRECALAGIEGVRWMPDWGQARIDAMVRGRPDWCISRQRHWGVPI 477          
The following BLAST results are available for this feature:
BLAST of CF838516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYI_HALOH1.243e-4445.59Isoleucyl-tRNA synthetase OS=Halothermothrix oreni... [more]
SYI_SHELP1.624e-4444.81Isoleucyl-tRNA synthetase OS=Shewanella loihica (s... [more]
SYI_PERMH1.624e-4444.04Isoleucyl-tRNA synthetase OS=Persephonella marina ... [more]
SYI_LISMO2.121e-4445.54Isoleucyl-tRNA synthetase OS=Listeria monocytogene... [more]
SYI_LISIN2.121e-4445.54Isoleucyl-tRNA synthetase OS=Listeria innocua GN=i... [more]
SYI_LISMH2.770e-4445.05Isoleucyl-tRNA synthetase OS=Listeria monocytogene... [more]
SYI_LISMF2.770e-4445.05Isoleucyl-tRNA synthetase OS=Listeria monocytogene... [more]
SYI_LISMC2.770e-4445.05Isoleucyl-tRNA synthetase OS=Listeria monocytogene... [more]
SYIM_SCHPO2.770e-4441.87Isoleucyl-tRNA synthetase, mitochondrial OS=Schizo... [more]
SYI_HALHL3.618e-4444.60Isoleucyl-tRNA synthetase OS=Halorhodospira haloph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838516 ID=CF838516; Name=CF838516; organism=Citrus sinensis; type=EST; length=858bp
TGCTGTCTTCAGGATGGTGAGTGCACCTCCGAGTACAAGTGGTTTATTAA
ACGAATTCCTTCCGGACTTGGGCTTGGCTGTATGGACAACAACCCCCTGG
ACTGTACCAGCCAATGCTGCTGTTGCAGTTAATGCCAAGCTACAATATGC
TGTCGTGGAGATACAATCCTTGTTGGAAGGTGATTCTGCGGCCCCTGCAA
ATAAGAAGAGTAGGCCCGGAAATGTTCTTAAGGATCAAAAGAAGGTTTTC
ATTATTGTGGCATCTGACCTTGTGCCAACCCTGGAAGCAAAATGGGGCAC
GAAGCTTGTTATCAAGAAAACATTGGCAGGTTCAGATCTTGAAAACTGCA
GGTATGTGCACCCAGTAGATAACAGGCAATGCCCGGTTGTGATCGGAGGA
GATTATATTACAACAGAATCGGGGACAGGGCTGGTGCATACAGCTCCTGG
TCATGGTCAGGAGGATTATGTGACTAGCCTTAAATATGGACTGCCAATAC
TTTCTCCAGTAGATGATGAGGGAAAGTTTACTGAGGAAGCAGGAAAGTTT
AGTGGGCTTGATGTACTTGGAGATGGTAATGTTGCTGTTGTGAAATACTT
GGATGAGCAAATGTCCCTTATCATGGAAGAACCATATGAACATAAGTACC
CATATGATTGGCGAACTAAGAAGCCTACAATATTTAGGGCAACTGAGCAA
TGGTTTGCATCAGTGGAAGGGTTCCGCCAGGCTGCCATGGATGCAATTGG
TCAAGTGAAATGGGTTCCGCCTCAGGCAATAAACAGAATTTCTGCAATGA
CTTCTGGCCGCTCGGACTGGTGCATATNCAGGCAAAGAACATGGGGGGTT
CCTATTCC
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