CF838517

Overview
NameCF838517
Unique NameCF838517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:587..1371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 9.555e-118
Identity = 209/222 (94.14%), Postives = 218/222 (98.20%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGY FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERFRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 9.555e-118
Identity = 209/222 (94.14%), Postives = 218/222 (98.20%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGY FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERFRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 9.555e-118
Identity = 208/222 (93.69%), Postives = 217/222 (97.75%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 9.555e-118
Identity = 208/222 (93.69%), Postives = 217/222 (97.75%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 2.780e-117
Identity = 207/222 (93.24%), Postives = 218/222 (98.20%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL+Y+ALD+EQELET+K+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKE+TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKELTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 8.089e-117
Identity = 206/222 (92.79%), Postives = 216/222 (97.30%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT+AEREIVRD+KEKLAY+ALDYEQE+ETA +SSSVEK+YELPDGQ+ITIG ERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.056e-116
Identity = 206/222 (92.79%), Postives = 217/222 (97.75%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL+Y+ALD+EQE+ET+K+SSSVEK+YELPDGQ+ITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYG IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGKIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 419.083 bits (1076), Expect = 1.380e-116
Identity = 210/222 (94.59%), Postives = 217/222 (97.75%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEG ALPHAILRLDLAGRDLTD LMKILTERGYMFTT+AEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK++ELPDGQ+ITIGAERFRCP++LFQPS+I MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  155 DSGDGVSHTVPIYEGDALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSHELPDGQVITIGAERFRCPKILFQPSMIEMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 8.943e-116
Identity = 205/222 (92.34%), Postives = 214/222 (96.40%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT+AEREIVRDMKEKLAY+ALDYEQELETAK+SS+VEK YELPDGQ+ITIGAERFRCPEV  QPS+IGME+ GIHETT+NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVTVQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 415.231 bits (1066), Expect = 1.992e-115
Identity = 202/222 (90.99%), Postives = 216/222 (97.30%), Query Frame = 2 
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEG++LPHAILRLDLAGRDLTD LMKILTERGYMFTTTAEREIVRD+KEKL++VA+DYEQE+ET+K+SSS+EKNYELPDGQ+ITIGAERFRCPEVLFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CF838517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
ACT2_ORYSJ9.555e-11894.14Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI9.555e-11894.14Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT1_ORYSJ9.555e-11893.69Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI9.555e-11893.69Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT3_SOLTU2.780e-11793.24Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT11_ARATH8.089e-11792.79Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT1_TOBAC1.056e-11692.79Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT3_SOYBN1.380e-11694.59Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_PEA8.943e-11692.34Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT8_ARATH1.992e-11590.99Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838517 ID=CF838517; Name=CF838517; organism=Citrus sinensis; type=EST; length=785bp
GGATTCTGGTGCTGGTGTGTCTCATACTGTACCAATCTATGAGGGATATG
CCCTTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACT
GATGCATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCAC
AGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTG
CCCTAGACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTT
GAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGA
AAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGG
AAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGAT
GTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTC
AACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCAC
TTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAA
TACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCA
GCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTG
TCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTT
TTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGG
TTGACATGGAGAAGTGCTAAGGATGGGGCCATTGA
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