CF838517

Overview
NameCF838517
Unique NameCF838517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:587..1371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.992e-115
Identity = 202/222 (90.99%), Postives = 216/222 (97.30%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEG++LPHAILRLDLAGRDLTD LMKILTERGYMFTTTAEREIVRD+KEKL++VA+DYEQE+ET+K+SSS+EKNYELPDGQ+ITIGAERFRCPEVLFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.797e-115
Identity = 204/222 (91.89%), Postives = 214/222 (96.40%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLT+ L KILTERGY FTT+AE+EIVRDMKEKLAY+ALD+EQEL+  KSSSSVEKN+ELPDGQ+ITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K E+DESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEHLAKILTERGYSFTTSAEKEIVRDMKEKLAYIALDFEQELDMVKSSSSVEKNFELPDGQVITIGAERFRCPEVLFQPSTIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEFDESGPSIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.797e-115
Identity = 204/222 (91.89%), Postives = 214/222 (96.40%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALDYEQELET+K+SSSVEK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 9.888e-115
Identity = 201/222 (90.54%), Postives = 217/222 (97.75%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GV+HTVPIYEGYALPHAILRLDLAGRDLTD +MKILTERGY FTTTAEREIVRD+KEKLAYVALD+EQE++TA++SSS+EK+YELPDGQ+ITIG+ERFRCPEVLF P+LIGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYAFTTTAEREIVRDIKEKLAYVALDFEQEMQTAQNSSSLEKSYELPDGQVITIGSERFRCPEVLFNPALIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.687e-114
Identity = 203/222 (91.44%), Postives = 214/222 (96.40%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALD+EQELET+K+SSSVEK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.877e-114
Identity = 202/222 (90.99%), Postives = 210/222 (94.59%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEG+ LPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQEL+TA+SSSS+EK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEA GIHE TYNSIMKCDVDIRKDLYGN+VLSGGSTMFPGI DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  155 DSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELDTARSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.877e-114
Identity = 202/222 (90.99%), Postives = 210/222 (94.59%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEG+ LPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQEL+TA+SSSS+EK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEA GIHE TYNSIMKCDVDIRKDLYGN+VLSGGSTMFPGI DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  155 DSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELDTARSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 411.379 bits (1056), Expect = 2.877e-114
Identity = 202/222 (90.99%), Postives = 214/222 (96.40%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLT+ ++KILTERGY FTTTAE+EIVRD+KEKLAY+ALD+EQELET K+ S+VEKNYELPDGQ+ITIGAERFRCPEVL+QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN VLSGGSTMFPGIADRMSKEI ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMVKILTERGYSFTTTAEKEIVRDVKEKLAYLALDFEQELETTKTGSAVEKNYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNHVLSGGSTMFPGIADRMSKEIQALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.435e-113
Identity = 205/222 (92.34%), Postives = 212/222 (95.50%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYS-VWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 664
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTE+     TTAEREIVRDMKEKLAYVALDYEQELETAK  S+VEKNYELPDGQ+ITIGAERFRCP+VLFQPS+IGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYS +WIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC
Sbjct:  155 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTEKSICHYTTAEREIVRDMKEKLAYVALDYEQELETAKRRSAVEKNYELPDGQVITIGAERFRCPQVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSDLWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 376          
BLAST of CF838517 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 407.912 bits (1047), Expect = 3.181e-113
Identity = 197/222 (88.74%), Postives = 213/222 (95.95%), Query Frame = 2
Query:    2 DSGAGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            DSG GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALD+EQE++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  155 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376          
The following BLAST results are available for this feature:
BLAST of CF838517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
ACT2_ARATH1.992e-11590.99Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT7_SOLTU5.797e-11591.89Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT12_ARATH5.797e-11591.89Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT_COLSC9.888e-11590.54Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT4_ARATH1.687e-11491.44Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT7_ORYSJ2.877e-11490.99Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI2.877e-11490.99Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT6_SOLTU2.877e-11490.99Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT1_DAUCA2.435e-11392.34Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACTA_PHYPO3.181e-11388.74Actin, plasmodial isoform OS=Physarum polycephalum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838517 ID=CF838517; Name=CF838517; organism=Citrus sinensis; type=EST; length=785bp
GGATTCTGGTGCTGGTGTGTCTCATACTGTACCAATCTATGAGGGATATG
CCCTTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACT
GATGCATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCAC
AGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTG
CCCTAGACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTT
GAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGA
AAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGG
AAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGAT
GTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTC
AACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCAC
TTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAA
TACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCA
GCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTG
TCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTT
TTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGG
TTGACATGGAGAAGTGCTAAGGATGGGGCCATTGA
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