CF838518

Overview
NameCF838518
Unique NameCF838518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN22_ORYSJ (Endoglucanase 22 OS=Oryza sativa subsp. japonica GN=GLU11 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.334e-61
Identity = 117/216 (54.17%), Postives = 147/216 (68.06%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            DY +AL KS+L+FE QRSGRLP +Q++TWRG+SGL+DG    VDLVGGYYDAGD+VKFGLPMAFT T+LSW  I+F + +       +A  AI+WGTDY +KA T  P   + +VGD + DH+CW+RPEDM T R  Y+V   NPGSD+           S+VF+ SDP YS  LL  A ++F+F D YRGSY  S+   V  +Y S SGY DELL
Sbjct:   55 DYREALEKSLLYFEAQRSGRLPYSQRVTWRGHSGLTDGLQQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWGAIDFAADIAAAGEWRHALEAIKWGTDYFVKAHT-HPFVYWAEVGDGDTDHYCWQRPEDMTTSRQAYRVDRDNPGSDLAGETAAALAAASIVFRRSDPHYSHLLLHHAQQLFEFGDTYRGSYDSSIEE-VRSYYASVSGYHDELL 268          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN16_ARATH (Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.334e-61
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 3
Query:  141 TFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            TF +Y DAL KS++F E QRSG+LPPN ++ WRG+S L DG   +VDL GGYYDAGDNVK+GLPMAFT T L+WS I +   ++    LENA+AAIRWGTDY LK + +    LYVQVGDPN DH CW RPE+M TPR V ++S + PG+++           S+VF+  D  Y+ +LL  A  +F  A  ++G+Y        CPFYCS SGY DEL+
Sbjct:   31 TFINYKDALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLVNVDLSGGYYDAGDNVKYGLPMAFTITTLAWSTITYEKELRATGELENARAAIRWGTDYFLKCA-SRKNRLYVQVGDPNADHQCWARPENMKTPRTVLEISDKVPGTEIAAEAAAAFAASSIVFRHVDHKYARRLLNKAKLLFKLAKSHKGTYDGE-----CPFYCSNSGYNDELI 243          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN8_ORYSJ (Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.088e-60
Identity = 114/216 (52.78%), Postives = 146/216 (67.59%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            +Y DAL KSI+F E QRSG+LPP  ++ WRG+SG+ DG   +VDL GGYYDAGDNVK+GLP+AFT T L+W+ + F   ++    LEN  AAIRWGTDY LKA+T     L+VQVGDPN DH CW RPE+M TPR +Y+++ + PGS++           S+VF+   P YS +LL  A  +F FA  ++G+Y        CPFYCSYSGY DELL
Sbjct:   42 NYKDALTKSIMFLEAQRSGKLPPTNRIKWRGDSGMEDGKLANVDLTGGYYDAGDNVKYGLPLAFTVTTLAWTAMAFEKELKAARELENVHAAIRWGTDYFLKAAT-KKDHLWVQVGDPNADHQCWVRPENMPTPRTLYQINDKTPGSEIAAETAAAMTASSMVFRKDKP-YSRRLLNKAKLLFQFAKTHQGTYDGE-----CPFYCSYSGYNDELL 250          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN21_ORYSJ (Endoglucanase 21 OS=Oryza sativa subsp. japonica GN=GLU9 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.055e-60
Identity = 117/216 (54.17%), Postives = 142/216 (65.74%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            DY  AL   +L+FE QRSG LP NQ++ WRG+SGL+DG    VDLVGGYYDAGDNVKFGLPMAFT T+LSW+  EF   +       +   AI+WGTDYL+KA TA    L+ +VGD + DH+CW+RPEDM T R  YKV   NPGSDV           S+VF+ S P YS  LL+ A ++FDF D+YRG Y  S+  V   +Y S SGY DELL
Sbjct:   36 DYKKALHSGLLYFEAQRSGHLPYNQRVRWRGHSGLADGLQQGVDLVGGYYDAGDNVKFGLPMAFTMTMLSWAAAEFWDEIAAAGERRHVLEAIKWGTDYLVKAHTAA-DELWAEVGDGDTDHYCWQRPEDMTTSRQAYKVDRDNPGSDVAGETAAALAAASIVFRRSKPRYSRLLLRHAEQLFDFGDRYRGKYDSSIGEVRA-YYASVSGYGDELL 249          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN13_ARATH (Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44550 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.056e-58
Identity = 113/216 (52.31%), Postives = 146/216 (67.59%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLE--NAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            +Y++AL  S+L+FE QRSG+LPPNQ++TWRG+S L DGS  H+DL GGYYDAGDN+KFG P+AFTTT+L+WS IE  S ++ H E  NA  A++W TDYL+KA    P  LY QVG+ N DH CW RPEDM TPR  Y++  Q+PGSD+           S+ F  SD +Y+  L+  A  +F FA  +RG Y +S+ +    FY S SGY DELL
Sbjct:   33 NYAEALKNSLLYFEAQRSGKLPPNQRVTWRGDSALRDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMASQLRAHHEKGNALRALKWATDYLIKAH-PQPNVLYGQVGEGNSDHKCWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFAPSDKAYANILIGHAKDLFAFAKAHRGLYQNSIPN-AGGFYAS-SGYEDELL 245          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN14_ARATH (Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44560 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 8.624e-58
Identity = 113/217 (52.07%), Postives = 147/217 (67.74%), Query Frame = 3
Query:  147 QDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNH--LENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            ++Y DAL KS+L+FE QRSG+LP NQ++TWRG+S L DGS  HVDL GGYYDAGDN+KFG P+AF TT+L+WS IE  + ++ H   ENA AA++W TD+L+KA    P  LY QVGD N DH CW RPEDM TPR  +++  Q+PGSD+           S+ F  SD +Y+  L+  A ++F+FA  Y G Y +S+ +    FY S SGY DELL
Sbjct:   32 RNYGDALTKSLLYFEAQRSGKLPSNQRVTWRGDSALRDGSDAHVDLTGGYYDAGDNMKFGFPLAFFTTMLAWSNIEMATQLKAHQEQENALAALKWATDFLIKAH-PEPNVLYGQVGDGNSDHECWMRPEDMTTPRPSFRIDAQHPGSDLAGETAAAMAAASIAFAPSDEAYAQILIGHAKELFEFAKAYPGIYQNSITN-AGGFYAS-SGYEDELL 245          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN12_ARATH (Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44540 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.624e-58
Identity = 112/216 (51.85%), Postives = 146/216 (67.59%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLE--NAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            +Y++AL KS+L+FE QRSG+LPPNQ++TWRG+S L DGS  H+DL GGYYDAGDN+KFG P+AFTTT+L+WS IE GS ++ H E  N+  A++W TDYL+KA    P  LY QVG+ N DH CW RPEDM TPR  Y++  Q+PGSD+           S+ F   D +Y+  L+  A  +F FA  + G Y +S+ +    FY S SGY DELL
Sbjct:   33 NYAEALQKSLLYFEAQRSGKLPPNQKVTWRGDSALKDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMGSELRAHHEQGNSLRALKWATDYLIKAH-PQPNVLYGQVGEGNSDHKCWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFAPFDKAYANILIGHAKDLFAFAKAHPGLYQNSITN-AGGFYAS-SGYEDELL 245          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN15_ARATH (Endoglucanase 15 OS=Arabidopsis thaliana GN=At2g44570 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.535e-57
Identity = 112/216 (51.85%), Postives = 146/216 (67.59%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLE--NAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            +Y +AL KS+L+FE QRSG+LP +Q++ WRG+S L DGS  HVDL GGYYDAGDN+KFG P+AFTTT+L+WS +E  S ++ H E  N  AA+RW TDYL+KA    P  LY QVGD N+DH CW RPEDM TPR  Y++  Q+PG+D+           S+ F  SD +Y+  L+  A ++F+FA  Y G Y +S+ +    FY S SGY DELL
Sbjct:   33 NYGEALTKSLLYFEAQRSGKLPLDQRVIWRGDSALRDGSDAHVDLTGGYYDAGDNMKFGFPLAFTTTMLAWSSVEMESQLKAHQEHGNTLAALRWATDYLIKAH-PEPNVLYGQVGDANLDHACWMRPEDMTTPRPSYRIDPQHPGADLAGETAAAMAAASLAFAPSDSAYAKTLISHAKELFEFAKDYPGVYHNSIPN-AGGFYPS-SGYEDELL 245          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSJ (Endoglucanase 13 OS=Oryza sativa subsp. japonica GN=GLU6 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.180e-56
Identity = 114/216 (52.78%), Postives = 139/216 (64.35%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            DY+ A  K +LFFE QRSG+LP ++ + WRG+S L+DG S  VDLVGGYYD+GD+VKFGLPMA+  T+LSW V+EF   M   N L     AIRWGT+Y +KA T    AL+VQVGD + DH CWER EDM TPR  +K+   NPGS+V           +  FK  D  YS  LL  + ++F FAD +RG Y DSL S    FY S SGY DELL
Sbjct:   38 DYAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHT-QHNALWVQVGDGDSDHLCWERAEDMSTPRTAFKIDINNPGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQLFTFADTFRGKYDDSLQSAK-KFYPSASGYQDELL 251          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSI (Endoglucanase 13 OS=Oryza sativa subsp. indica GN=GLU6 PE=3 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.180e-56
Identity = 114/216 (52.78%), Postives = 139/216 (64.35%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            DY+ A  K +LFFE QRSG+LP ++ + WRG+S L+DG S  VDLVGGYYD+GD+VKFGLPMA+  T+LSW V+EF   M   N L     AIRWGT+Y +KA T    AL+VQVGD + DH CWER EDM TPR  +K+   NPGS+V           +  FK  D  YS  LL  + ++F FAD +RG Y DSL S    FY S SGY DELL
Sbjct:   38 DYAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHT-QHNALWVQVGDGDSDHLCWERAEDMSTPRTAFKIDINNPGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQLFTFADTFRGKYDDSLQSAK-KFYPSASGYQDELL 251          
The following BLAST results are available for this feature:
BLAST of CF838518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUN22_ORYSJ8.334e-6154.17Endoglucanase 22 OS=Oryza sativa subsp. japonica G... [more]
GUN16_ARATH8.334e-6152.05Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43... [more]
GUN8_ORYSJ1.088e-6052.78Endoglucanase 8 OS=Oryza sativa subsp. japonica GN... [more]
GUN21_ORYSJ7.055e-6054.17Endoglucanase 21 OS=Oryza sativa subsp. japonica G... [more]
GUN13_ARATH5.056e-5852.31Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN14_ARATH8.624e-5852.07Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN12_ARATH8.624e-5851.85Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN15_ARATH9.535e-5751.85Endoglucanase 15 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN13_ORYSJ6.180e-5652.78Endoglucanase 13 OS=Oryza sativa subsp. japonica G... [more]
GUN13_ORYSI6.180e-5652.78Endoglucanase 13 OS=Oryza sativa subsp. indica GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06N04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838518 ID=CF838518; Name=CF838518; organism=Citrus sinensis; type=EST; length=791bp
GAAATATTATTCCTTTTTCTTATAATTTTTGCATGGTACTGTCAATACTA
CGGCAAATGGATCCTGTTACTAAATTTTCACTAACTTTGCAGATTCTTGG
CTTAACTCTTTGTGCACTTAGCTTATTGTGCTCGGCCTTCACTTTTCAAG
ATTACTCTGATGCTCTTGGGAAGTCCATTCTCTTCTTTGAGGGACAGCGG
TCTGGAAGATTGCCGCCTAACCAGCAGCTTACATGGAGGGGCAATTCCGG
GCTATCTGATGGTTCCTCTTATCATGTTGATCTAGTGGGCGGATATTATG
ATGCTGGTGACAACGTCAAGTTTGGCCTTCCAATGGCTTTCACAACTACA
TTGTTGTCCTGGAGTGTGATTGAATTTGGAAGCTCAATGCAGAACCATCT
TGAGAATGCCAAAGCTGCCATCCGTTGGGGCACAGATTATCTTTTAAAGG
CATCTACTGCCACCCCCGGCGCCTTATACGTCCAGGTAGGGGATCCAAAC
ATGGATCACCACTGCTGGGAGAGACCTGAAGATATGGACACACCACGAAA
TGTTTACAAAGTCTCAACACAGAACCCAGGTTCTGATGTAGCAGCAGAGA
CAGCGGCAGCACTGGCTGCAGCTTCAGTAGTGTTTAAAGACTCCGACCCT
TCTTATTCCACCAAATTGCTTAAAACGGCCATGAAGGTATTTGATTTTGC
AGACAAATATAGAGGTTCTTACAGTGACTCTCTCAACTCAGTGGTCTGCC
CATTTTACTGCTCATATTCAGGATACCTTGATGAGCTCCTT
back to top