CF838518

Overview
NameCF838518
Unique NameCF838518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUNX_PRUPE (Endoglucanase CX (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.898e-34
Identity = 70/89 (78.65%), Postives = 74/89 (83.15%), Query Frame = 3
Query:  525 PEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            PEDMDTPRNVYKVSTQNPGSDV           S+VFKDSDPSYS KLL TAMKVFDFAD+YRGSYSDS+ SVVCPFYCSYSG+ DELL
Sbjct:    1 PEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFKDSDPSYSGKLLHTAMKVFDFADRYRGSYSDSIGSVVCPFYCSYSGHHDELL 89          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.386e-31
Identity = 89/232 (38.36%), Postives = 125/232 (53.88%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPN-QQLTWRGNSGLSDGSS----YHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQV-----------GDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELL 791
            +Y+ AL  ++ FF  Q+SG+LP N   ++WR +S L DG       + DLVGGYYDAGD++KF  PM++  T+LSWSVIE+ +  Q    LE+ K  I+WGTDY LK   ++   +YV V            + + DH+CW RPED+   R V +    +  SD+           S+VFKD +  YS  L+  A  ++ FA   R  YS +       FY S S + DELL
Sbjct:  108 NYTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGKGDPGQCYKDLVGGYYDAGDSIKFNFPMSYAMTMLSWSVIEYSAKYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQVGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQ--CYSSCSDLAAEMAAALASASIVFKD-NRLYSKNLVHGAKTLYRFATTSRNRYSQN-GKESSKFYNS-SMFEDELL 334          
BLAST of CF838518 vs. ExPASy Swiss-Prot
Match: GUN7_ARATH (Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.214e-29
Identity = 79/207 (38.16%), Postives = 114/207 (55.07%), Query Frame = 3
Query:  150 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVD-LVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLL---KASTATPGALYVQVG------DPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDF--ADKYRGSYSD 728
            +Y+ AL K++ FF+ Q+SG+LP   +++WRG+SG  DG    V  LVGGYYD G NVKF  PMAF+ T+LSWS+IE+    +  +  ++ +  ++WGTDYLL     S      +Y QVG      +   D +CW++PEDM   R    V +    +D+           S+VF D  P Y+ KL K A  ++ F  +   R  YSD
Sbjct:  116 NYTLALHKALQFFDAQKSGKLPKKNKVSWRGDSGTKDGLPDVVGGLVGGYYDGGSNVKFHFPMAFSMTMLSWSLIEYSHKYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGGLRDSESPDDIYCWQKPEDMSYDR---PVLSSTSAADLGAEVSAALAAASIVFTDK-PDYAKKLKKGAETLYPFFRSKSRRKRYSD 318          
The following BLAST results are available for this feature:
BLAST of CF838518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUNX_PRUPE3.898e-3478.65Endoglucanase CX (Fragment) OS=Prunus persica PE=2... [more]
GUN21_ARATH1.386e-3138.36Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]
GUN7_ARATH2.214e-2938.16Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838518 ID=CF838518; Name=CF838518; organism=Citrus sinensis; type=EST; length=791bp
GAAATATTATTCCTTTTTCTTATAATTTTTGCATGGTACTGTCAATACTA
CGGCAAATGGATCCTGTTACTAAATTTTCACTAACTTTGCAGATTCTTGG
CTTAACTCTTTGTGCACTTAGCTTATTGTGCTCGGCCTTCACTTTTCAAG
ATTACTCTGATGCTCTTGGGAAGTCCATTCTCTTCTTTGAGGGACAGCGG
TCTGGAAGATTGCCGCCTAACCAGCAGCTTACATGGAGGGGCAATTCCGG
GCTATCTGATGGTTCCTCTTATCATGTTGATCTAGTGGGCGGATATTATG
ATGCTGGTGACAACGTCAAGTTTGGCCTTCCAATGGCTTTCACAACTACA
TTGTTGTCCTGGAGTGTGATTGAATTTGGAAGCTCAATGCAGAACCATCT
TGAGAATGCCAAAGCTGCCATCCGTTGGGGCACAGATTATCTTTTAAAGG
CATCTACTGCCACCCCCGGCGCCTTATACGTCCAGGTAGGGGATCCAAAC
ATGGATCACCACTGCTGGGAGAGACCTGAAGATATGGACACACCACGAAA
TGTTTACAAAGTCTCAACACAGAACCCAGGTTCTGATGTAGCAGCAGAGA
CAGCGGCAGCACTGGCTGCAGCTTCAGTAGTGTTTAAAGACTCCGACCCT
TCTTATTCCACCAAATTGCTTAAAACGGCCATGAAGGTATTTGATTTTGC
AGACAAATATAGAGGTTCTTACAGTGACTCTCTCAACTCAGTGGTCTGCC
CATTTTACTGCTCATATTCAGGATACCTTGATGAGCTCCTT
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