CF838522

Overview
NameCF838522
Unique NameCF838522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 7.506e-80
Identity = 145/251 (57.77%), Postives = 184/251 (73.31%), Query Frame = 1
Query:    4 VAAARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +AAARP +++ S +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPLVV++ E A +VKAFRNIPG              APGGHLG
Sbjct:    1 MAAARPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.803e-80
Identity = 146/249 (58.63%), Postives = 179/249 (71.89%), Query Frame = 1
Query:   10 AARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            AARPLITV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT  A+ VL+++ A+ D EK K+S+  R GKGK+RNRR I R+GPL++Y  +   + +AFRNIPG              APGGH+G
Sbjct:    2 AARPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQRRGPLIIYGTDNG-ISRAFRNIPGITLVNVNRLNLLSMAPGGHVG 246          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.803e-80
Identity = 147/251 (58.57%), Postives = 179/251 (71.31%), Query Frame = 1
Query:    4 VAAARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +A ARPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A  D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFRNIPG              APGGH+G
Sbjct:    1 MACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 145/251 (57.77%), Postives = 178/251 (70.92%), Query Frame = 1
Query:    4 VAAARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +A ARPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y+ +   ++KAFR  PG              APGGH+G
Sbjct:    1 MACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRKHPGITLLNVSKLNILKLAPGGHVG 247          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 143/251 (56.97%), Postives = 183/251 (72.91%), Query Frame = 1
Query:    4 VAAARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +AAARP +++ + +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+ +R GKGK+RNRR++ R+GPLVV++ E   +VKAFRNIPG              APGGHLG
Sbjct:    1 MAAARPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.712e-74
Identity = 141/248 (56.85%), Postives = 173/248 (69.76%), Query Frame = 1
Query:   13 ARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPLVVY AE   +VKA RN+PG              APG HLG
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY-AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLG 245          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 277.715 bits (709), Expect = 4.712e-74
Identity = 141/248 (56.85%), Postives = 173/248 (69.76%), Query Frame = 1
Query:   13 ARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            +RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+ +R GKGK RNRR+  R+GPLVVY AE   +VKA RN+PG              APG HLG
Sbjct:    2 SRPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY-AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLG 245          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.676e-71
Identity = 138/248 (55.65%), Postives = 172/248 (69.35%), Query Frame = 1
Query:   13 ARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            ARPL++V + + + A D +  + LP V KA IRPD+V  VH  + +N+RQ YAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT  A+  L+++  +AD +K   SQ  R G+G MR+RR I+R+GPLVVY  +   L KAFRNIPG              APGGH+G
Sbjct:    6 ARPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDEG-LRKAFRNIPGIETINVDKLNLLKLAPGGHVG 250          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.086e-70
Identity = 132/228 (57.89%), Postives = 164/228 (71.93%), Query Frame = 1
Query:   76 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            V LP+V+   IRPD+V FVH+N++KN+RQ Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S ++++KT AA+++LK+I AYAD  K  DS+ IR G GK RNRRY  RKGPLVV S +   + +A RNIPG              APGGHLG
Sbjct:   20 VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGK-TTVSQALRNIPGVEVANVSRLNLLKLAPGGHLG 246          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.785e-69
Identity = 134/248 (54.03%), Postives = 166/248 (66.94%), Query Frame = 1
Query:   13 ARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            ARP ++V S   D       T  LP V  A IR D+V FVH+N++KNSRQPYAV+R +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFGNMCRGGRMFAPTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D   + EKT  A+  LK +GA  D  +  DS+ IR G+GKMRNRRY++R+GP++V      K  +AFRNI G              APGGH+G
Sbjct:    3 ARPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRNRRYVARRGPMLVMPDN--KGTRAFRNIFGLDLANVNSLNLLHLAPGGHVG 245          
The following BLAST results are available for this feature:
BLAST of CF838522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4A_SCHPO7.506e-8057.7760S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4_URECA9.803e-8058.6360S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_PONAB9.803e-8058.5760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_CANFA1.084e-7857.7760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4B_SCHPO1.084e-7856.9760S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST4.712e-7456.8560S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST4.712e-7456.8560S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_DROME1.676e-7155.6560S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4_DICDI1.086e-7057.8960S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB7.785e-6954.0360S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838522 ID=CF838522; Name=CF838522; organism=Citrus sinensis; type=EST; length=757bp
CCGGTTGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGAAGGTGA
CATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAAGG
CCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATCTCCAAG
AACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACCTC
CGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGTCC
CCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGTGT
CGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCG
TAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGCCG
CCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGACT
GTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAGAA
AACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACG
CCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATG
AGAAATAGGCGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGC
CGAGGGTGCTAAGCTTGTCAAGGCTTTTAGGAACATTCCCGGTGTTGAGG
TTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGCGCCGGGTGGGCAT
CTTGGGC
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