CF838522

Overview
NameCF838522
Unique NameCF838522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 6.169e-66
Identity = 128/249 (51.41%), Postives = 164/249 (65.86%), Query Frame = 1
Query:   10 AARPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            AARPL+TV   + +      S + LP V +  IRPD+V F+   + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAP K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  ES  KT  A+  L++   +AD EK  +S+  R GKGK+RNR++  + GP+V+Y  + A+  +AFRNIPG              APGGHLG
Sbjct:    2 AARPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIY-GQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLG 246          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.135e-42
Identity = 95/200 (47.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query:  181 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V         S S   ++KT  A+ +LK+I AY+D  K   S+ IR G+GKMR R+   RKGPLVVY  +  + VKAFRNIPG              APG H+G
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMG 202          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.828e-32
Identity = 88/244 (36.07%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   31 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSA-EGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            V +LEG+       TV LP   +  +R D++         N RQPY    +AG +TSAESWG G  V+ +PRV G     AG+ A      GG +  APT   + W +++N  ++R            P  V  RGH I+ VP +P+VV D  +S+ K     +  K +G +AD E+AK ++ IR GKGK R RRY+  K  L+V    EG KL    RN PG              APG H G
Sbjct:    5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKL--GARNHPGVDVVEAMHLGVEHLAPGAHPG 241          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 80/244 (32.79%), Postives = 123/244 (50.41%), Query Frame = 1
Query:   25 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            I V SLEG+    A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T+   +V +++G   D  +A++ + IR GKGKMR R+Y + +GPL+V   +   + +  RN PG              APG H G
Sbjct:    3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIVV-GDDKGITRGARNHPGVDVVRVENLNAELLAPGTHPG 236          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.176e-30
Identity = 79/214 (36.92%), Postives = 105/214 (49.07%), Query Frame = 1
Query:  106 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGG 747
            IRPD++   + +      QP  V   AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D E+A +   IR GKGKMR RRY   K  LVV S   A L+ A RN PG              APGG
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGG 262          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.073e-29
Identity = 77/243 (31.69%), Postives = 120/243 (49.38%), Query Frame = 1
Query:   31 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAE-GAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            V S+EG++  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D   SV+ T    ++ + +G Y D  +AK+ + IR G+GK R R+Y   KGPL+V   + G KL    RN  G              APG H G
Sbjct:    5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKL--GARNHAGVDVVTVENLNAELLAPGTHPG 236          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29
Identity = 78/244 (31.97%), Postives = 122/244 (50.00%), Query Frame = 1
Query:   25 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            ++V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G     +G+ A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E++ K    + +LK IG   D ++ K+S+G+R GKGKMR RRY   KGPL+V S   + +V++  NIPG              APGGH G
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNIPGVNVVSANLVSVIHLAPGGHPG 243          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.617e-29
Identity = 78/236 (33.05%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   49 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT   ++ L+ IG Y D  +AK  + IR G+GK+R R+Y  +K  L+V + E A ++KA RN+ G              APG H G
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV-AGESAPILKAARNLSGVDVATVDSLNAELLAPGTHAG 235          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.031e-29
Identity = 82/237 (34.60%), Postives = 111/237 (46.84%), Query Frame = 1
Query:   49 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ + IR GKGK R R+Y +RK  L+V + E + L KA  N+PG              APG H G
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV-TGEESLLSKAANNLPGVDVATVTALNAELLAPGTHAG 235          
BLAST of CF838522 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 79/242 (32.64%), Postives = 119/242 (49.17%), Query Frame = 1
Query:   31 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLG 756
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G      + A      GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G MR RRY  RK  L+V    G + ++A RN+ G              APG   G
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGS-----RVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV---TGGEPLRAARNLAGVDAVAVDQLNAELLAPGTQAG 232          
The following BLAST results are available for this feature:
BLAST of CF838522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_CAEEL6.169e-6651.4160S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI2.135e-4247.5060S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METKA5.828e-3236.0750S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METTH9.940e-3232.7950S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_PYRAE4.176e-3036.9250S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METS32.073e-2931.6950S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_SULAC3.535e-2931.9750S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_METBF4.617e-2933.0550S ribosomal protein L4P OS=Methanosarcina barker... [more]
RL4_METBU6.031e-2934.6050S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_METMJ5.105e-2832.6450S ribosomal protein L4P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838522 ID=CF838522; Name=CF838522; organism=Citrus sinensis; type=EST; length=757bp
CCGGTTGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGAAGGTGA
CATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAAGG
CCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATCTCCAAG
AACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACCTC
CGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGTCC
CCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGTGT
CGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCG
TAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGCCG
CCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGACT
GTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAGAA
AACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACG
CCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATG
AGAAATAGGCGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGC
CGAGGGTGCTAAGCTTGTCAAGGCTTTTAGGAACATTCCCGGTGTTGAGG
TTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGCGCCGGGTGGGCAT
CTTGGGC
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