CF838529

Overview
NameCF838529
Unique NameCF838529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.571e-83
Identity = 147/211 (69.67%), Postives = 180/211 (85.31%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSLSN+ LDSYVLSESSLF++PYK++IKTCGTTKLLLSI  +L+LA  LSL V++VRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG+ D TK+WHVYSAS+   ++ N VYTLEMCMTGLD+ +ASVFYK   SSA  MT++SG
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDSYVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELSLDVKAVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYTLEMCMTGLDKDKASVFYKNESSSAGSMTDNSG 211          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.680e-83
Identity = 153/211 (72.51%), Postives = 180/211 (85.31%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK  LDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SIP IL+LAE+L L V+SVRYTRGSFIF GAQ FPHRSFSEEVAVLD +F K G  S A VMGSP   ++WHVYSA+AE  ++ +PVYTLEMCMTGLD+++ASVF+K+  +SAA+MTE SG
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLNSIPPILRLAETLFLDVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDNYFAKLGAGSKAIVMGSPGKPQKWHVYSATAET-NYDDPVYTLEMCMTGLDKEKASVFFKSQSASAAVMTESSG 225          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.572e-83
Identity = 153/211 (72.51%), Postives = 178/211 (84.36%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLLSIP ILKLA+S+SL+VRSVRYTRGSFIF GAQ FPHR FSEEVAVLDG FGK G  S A+++G  D  + WH+Y AS+++ S    VYTLEMCMTGLDR++ASVF+K    SAA MT +SG
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPILKLADSISLNVRSVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGFFGKLGSGSMAYILGGSDEAQNWHIYCASSDSVSPEGSVYTLEMCMTGLDREKASVFFKEQTGSAAEMTVNSG 211          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 7.798e-83
Identity = 152/215 (70.70%), Postives = 178/215 (82.79%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA----GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + VSAIGFEGYEKRLEVSFFEP +F D  G+GLR+L K Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLL SI  +L+LA  LSL V+SVRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A    G++ N VYTLEMCMTGLD+++ASVFYK   SSA  MT++SG
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLPSIEPLLRLAGELSLEVKSVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGLDKEKASVFYKNESSSAGSMTDNSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 8.622e-82
Identity = 150/212 (70.75%), Postives = 177/212 (83.49%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHV-NPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEGYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSLSN+ LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +LKLA  LSLSV+SV+YTRGSF+  G QPFPHRSFSEEV+VLDGHF + G++S A++MG+ D TK+WHVY+ASA+  S+  N VYTLEMCMTGLDR++A+VFYK        MT++SG
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTGSMTDNSG 212          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.126e-81
Identity = 154/211 (72.99%), Postives = 177/211 (83.89%), Query Frame = 1
Query:  169 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            SAIGFEG+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSLSN+ LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+L+  LSL+V+SVRYTRGSFIF GAQ FPHRSF+EEV VLD HFGK GM S A+VMG  +  ++WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSG
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILELSGELSLTVQSVRYTRGSFIFPGAQTFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.126e-81
Identity = 153/211 (72.51%), Postives = 178/211 (84.36%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SI  IL LA+ L L V+SVRYTRGSFIF GAQ +PHRSFSEEVAVLD +FG  G  S AFVMGSP   ++WHVYSA+AE  S+ +PVYTLEMCMTGLD+ +ASVF+K+  +SAA+MTE SG
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLHSILPILTLADGLCLDVKSVRYTRGSFIFPGAQSYPHRSFSEEVAVLDKYFGNLGTGSKAFVMGSPAKPQKWHVYSATAEP-SYDDPVYTLEMCMTGLDKGKASVFFKSESASAAVMTETSG 234          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.279e-81
Identity = 148/211 (70.14%), Postives = 174/211 (82.46%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEG+EKRLE++FFEP +F DP G+GLR+L K QLDEIL PAECTIV SL+NE +DSYVLSESSLF+Y YK+IIKTCGTTKLL +IP IL+LA  LSL V+SVRYTRGSFIF GAQ + HRSFSEEVAVLDG+FGK    S AFVMG P   ++WHVYSASAE  S   PVYTLEMCMTGL +++ASVF+K+   +AA+MTE SG
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFIYAYKIIIKTCGTTKLLRAIPPILRLAGKLSLDVKSVRYTRGSFIFPGAQSYAHRSFSEEVAVLDGYFGKLAAGSKAFVMGDPAKPQKWHVYSASAETISFEEPVYTLEMCMTGLKKEKASVFFKSQSPNAAVMTESSG 211          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.622e-80
Identity = 152/214 (71.03%), Postives = 177/214 (82.71%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHV-NPVYTLEMCMTGLDRKRASVFYKTNESSA--AMMTEDSG 792
            + +SAIGFEGYEKRLEVSFFEP  F D  G GLR+L++ QLDEIL PA C IVSSLSN+HLDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +LKLA  LSLSV+SV+YTRGSF+  G QPFPHRSFSEEV+VLDGHF K G++S A++MG+ D  K+WHVY+ASA+  S   N VYTLEMCMTGLD+++ASVFYK NE+      MT++SG
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDHLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTKLGLNSVAYLMGNDDENKKWHVYAASAQTSSDCNNNVYTLEMCMTGLDKEKASVFYK-NETGGENGSMTDNSG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.553e-78
Identity = 144/213 (67.61%), Postives = 173/213 (81.22%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA--GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + +SAIGFEG  +RLEVSFFEP +F D  G+GLR+LSK Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLLLSI  +L+LA  +SL V+SVRYTRGSF+  G QPFP R+ SEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A   +  N VYTLEMCM+GLD+ +ASVF+K   SSA  MT++SG
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLLSIEPLLRLAGGVSLEVKSVRYTRGSFLCPGGQPFPQRNLSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPAKNSNGDNNVYTLEMCMSGLDKDKASVFFKNESSSAGSMTDNSG 213          
The following BLAST results are available for this feature:
BLAST of CF838529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM2_ARATH1.571e-8369.67S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_DIACA2.680e-8372.51S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_PEA4.572e-8372.51S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM2_BRAJU7.798e-8370.70S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_ARATH8.622e-8270.75S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_HELAN1.126e-8172.99S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_DIACA1.126e-8172.51S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_SPIOL4.279e-8170.14S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM3_BRAJU3.622e-8071.03S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM1_BRAJU7.553e-7867.61S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838529 ID=CF838529; Name=CF838529; organism=Citrus sinensis; type=EST; length=792bp
AAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCT
TAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTC
TCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGC
AAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAG
GCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTA
GGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCT
GCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATA
TGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCA
AAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAG
TTAGCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGG
AAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTG
AGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGC
ACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTA
CTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAG
AGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAA
ACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGC
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