CF838529

Overview
NameCF838529
Unique NameCF838529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.251e-64
Identity = 129/217 (59.45%), Postives = 161/217 (74.19%), Query Frame = 1
Query:  157 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSG 792
            A PVSAIGFEGYEKRLE++F E  VF DP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+YP K++IKTCGTTKLLL+IP IL+LAE LS+ + +V+Y+RG+FIF GAQP PHRSFSEEVA L+ +FG       A+V+G P    ++WHV+ A+        P+  LEMCMTGLD+K+A VF+KT    N + A  MT+ SG
Sbjct:    9 ASPVSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSRGTFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHVFYATEYP---EQPMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSG 222          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.251e-64
Identity = 128/218 (58.72%), Postives = 161/218 (73.85%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNE----SSAAMMTEDSG 792
            MA PVSAIGFEGYEKRLE++F E  +FADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTT LLL+IP IL+LAE L + + +V+Y+RG FIF GAQP PHRSFSEEV VL+ +FG       A+V+G P    ++WH+Y A+ +      P+ TLEMCMTGLD+ +ASVF+KT+     S A  MT+ SG
Sbjct:    1 MAAPVSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSQKIVIKTCGTTMLLLTIPRILELAEELCMPLAAVKYSRGMFIFPGAQPAPHRSFSEEVDVLNRYFGHLNSGGNAYVIGDPAKPGQKWHIYYATEQP---EQPMVTLEMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.634e-64
Identity = 129/215 (60.00%), Postives = 161/215 (74.88%), Query Frame = 1
Query:  163 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSG 792
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP IL+LAE LS+ + +V+Y+RG FIF  AQP PHRSFSEEVAVL+ +FG       A+V+G P    ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT    + S A  MT+ SG
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSG 222          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.634e-64
Identity = 129/215 (60.00%), Postives = 161/215 (74.88%), Query Frame = 1
Query:  163 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSG 792
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP IL+LAE LS+ + +V+Y+RG FIF  AQP PHRSFSEEVAVL+ +FG       A+V+G P    ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT    + S A  MT+ SG
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSG 222          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.484e-29
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  178 GFEGYEKRLEVSFFE------PGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPV-YTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            GFEG EK+L++ F          +   P   GLR++ K +   +L  A CTI+S  SN+H+DSYVLSESSLFVYP + +IKTCGTT LL  I  ++++ +   L V  V ++R +      Q FPH SFS+EV  L+  F     D  A+VMG   N   W++Y A       +     T E+ M  LD      F+K    SA   T +SG
Sbjct:   28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDHMDSYVLSESSLFVYPRRAMIKTCGTTTLLHLIAKMVQVGKECGLEVEMVVFSRKNLNQPSKQVFPHCSFSDEVNFLNKIF-----DGQAYVMGDV-NKDHWNLYIADFRKNPTLQRTEQTFEVMMHDLDETVMKQFFKREGVSAWDTTVNSG 233          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.352e-26
Identity = 77/194 (39.69%), Postives = 112/194 (57.73%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS--ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYK 750
            FEG EK LE+ F           R LR + + ++D +L  A C I+ S  NE +DSYVLSESSLF+   +VI+KTCGTT+LL ++P I++LA + +    V+SV Y+R +F+    QP  H++F  EV  LD  F    +D  A+ +GS     RW++Y+     E  +H  P +TLE+ M+ LD +    F K
Sbjct:   25 FEGAEKLLELWFCSS---TQNETRSLRIIPREEIDAMLDIARCKILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFF----VDGHAYCLGSL-KQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTK 210          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 75/190 (39.47%), Postives = 107/190 (56.32%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSL--SVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVF 744
            FEG EK LE+ F +       G   LR++   +L  +L  A+C I+ S SNE +DSYVLSESS+F+  +++I+KTCGTT+LL +I  IL +A+      +V SV Y+R +F+    QP+PH SF  EV  L+ HF       +A+ +G P    RW +Y+          P +TLE+ M GL     S F
Sbjct:   30 FEGAEKLLEIWFDKN----QNGATSLRNIPYSELVSMLDIAQCRILHSKSNECMDSYVLSESSMFISDFRIILKTCGTTRLLHAIERILHIAKIYCNMDNVVSVFYSRKNFMHPEKQPYPHSSFETEVDYLEEHFA----GGSAYCIG-PQRQDRWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTF 210          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDLPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 76/207 (36.71%), Postives = 116/207 (56.04%), Query Frame = 1
Query:  181 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +LKLA   S   S++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SG
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208          
The following BLAST results are available for this feature:
BLAST of CF838529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_MAIZE1.251e-6459.45S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH1.251e-6458.72S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_ORYSJ1.634e-6460.00S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI1.634e-6460.00S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_DICDI6.484e-2938.68S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_CAEEL1.352e-2639.69S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_ONCVO3.934e-2639.47S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_RAT5.137e-2636.71S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU6.710e-2636.71S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM_BOVIN6.710e-2636.71S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838529 ID=CF838529; Name=CF838529; organism=Citrus sinensis; type=EST; length=792bp
AAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCT
TAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTC
TCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGC
AAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAG
GCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTA
GGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCT
GCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATA
TGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCA
AAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAG
TTAGCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGG
AAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTG
AGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGC
ACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTA
CTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAG
AGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAA
ACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGC
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